rs33253030 SNP Detail

Summary

• ID
  rs33253030
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152951401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCCTT CCCAGCTGAA
  CCCCTAACAG GCGTACATCC AACTCCAGAA CCTCTTACAC AAAGACCACA ATCTACCACC
  ATCTCCTCTG TGTGACACTG GGGCATGTCA CTGGCTACTC TCTGGATTCC AGCTTCCAAC
  TCTGTAAAAT GGGCTGTTTT ACATTCATCT GAAGCTGAGT TGTCCAGAGA AGGGGAGCAG
  K
  GCTGCTGGGT ACTGGAGAGA GAGCCTGGTT TGTCTGTGCC TCTGTTTGCA TAGCTGCAGG
  ATGGAGATGG TAAGAGGACA GGTTGAATGT TCCCTATCCA AACTACACCT GATCAGAGGG
  GTTTAGGATT TCCGAGTGTG GCAGAATTCT GTATGTCAAG TGCACAGCGA GGCATCCTGG
  AGTGAAAATT AGGTCTTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45256494	mCV22910325	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss147984331	ENSMUSSNP1552009	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33253030					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152951401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	329 bp distal
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	1443 bp distal
Rr567551	regulatory region 567551	1003 bp distal
Rr567552	regulatory region 567552	953 bp distal
Rr567553	regulatory region 567553	789 bp distal
Tssr20863	transcription start site region 20863	1808 bp downstream
Tssr20864	transcription start site region 20864	1772 bp downstream
Tssr20865	transcription start site region 20865	997 bp downstream
Tssr20866	transcription start site region 20866	939 bp downstream
Tssr26882	transcription start site region 26882	459 bp upstream