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rs33253234 SNP Detail
Summary
  • ID
    rs33253234
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:3140 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATTTAAACCT AGGGATTTTA TTTATTTTAG CAACATCTAG
CCTATCAGTT TACTCCATTC TATGATCAGG ATGAGCCTCA AACTCCAAAT ACTCACTATT
Y
GGAGCTTTAC GAGCCGTAGC CCAAACAATT TCATATGAAG TAACCATAGC TATTATCCTT
TTATCAGTTC TATTAATAAA TGGATCCTAC TCTCTACAAA                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790952 NES10981312 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33253234 SNP C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790952 NES10981312 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3140 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 774 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 465 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1878 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 566 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 390 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 705 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1949 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 632 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1810 bp upstream
Tssr160110 transcription start site region 160110 997 bp downstream
Tssr160111 transcription start site region 160111 978 bp downstream
Tssr160112 transcription start site region 160112 962 bp downstream
Tssr160113 transcription start site region 160113 929 bp downstream
Tssr160114 transcription start site region 160114 881 bp downstream
Tssr160115 transcription start site region 160115 849 bp downstream
Tssr160116 transcription start site region 160116 807 bp downstream
Tssr160117 transcription start site region 160117 784 bp downstream
Tssr160118 transcription start site region 160118 760 bp downstream
Tssr160119 transcription start site region 160119 738 bp downstream
Tssr160120 transcription start site region 160120 712 bp downstream
Tssr160121 transcription start site region 160121 379 bp downstream
Tssr160122 transcription start site region 160122 276 bp downstream
Tssr160123 transcription start site region 160123 81 bp downstream
Tssr160124 transcription start site region 160124 65 bp downstream
Tssr160125 transcription start site region 160125 18 bp downstream
Tssr160126 transcription start site region 160126 31 bp upstream
Tssr160127 transcription start site region 160127 235 bp upstream
Tssr160128 transcription start site region 160128 294 bp upstream
Tssr160129 transcription start site region 160129 766 bp upstream
Tssr160130 transcription start site region 160130 865 bp upstream
Tssr160131 transcription start site region 160131 1088 bp upstream
Tssr160132 transcription start site region 160132 1146 bp upstream
Tssr160133 transcription start site region 160133 1264 bp upstream
Tssr160134 transcription start site region 160134 1526 bp upstream
Tssr160135 transcription start site region 160135 1610 bp upstream
Tssr160136 transcription start site region 160136 1730 bp upstream
Tssr160137 transcription start site region 160137 1875 bp upstream
Tssr160232 transcription start site region 160232 1897 bp upstream
Tssr160233 transcription start site region 160233 1874 bp upstream
Tssr160234 transcription start site region 160234 1841 bp upstream
Tssr160235 transcription start site region 160235 1792 bp upstream
Tssr160236 transcription start site region 160236 1717 bp upstream
Tssr160237 transcription start site region 160237 1685 bp upstream
Tssr160238 transcription start site region 160238 1634 bp upstream
Tssr160239 transcription start site region 160239 1596 bp upstream
Tssr160240 transcription start site region 160240 1521 bp upstream
Tssr160241 transcription start site region 160241 1487 bp upstream
Tssr160242 transcription start site region 160242 1195 bp upstream
Tssr160243 transcription start site region 160243 1131 bp upstream
Tssr160244 transcription start site region 160244 1084 bp upstream
Tssr160245 transcription start site region 160245 1031 bp upstream
Tssr160246 transcription start site region 160246 958 bp upstream
Tssr160247 transcription start site region 160247 860 bp upstream
Tssr160248 transcription start site region 160248 786 bp upstream
Tssr160249 transcription start site region 160249 751 bp upstream
Tssr160250 transcription start site region 160250 712 bp upstream
Tssr160251 transcription start site region 160251 636 bp upstream
Tssr160252 transcription start site region 160252 285 bp upstream
Tssr160253 transcription start site region 160253 92 bp upstream
Tssr160254 transcription start site region 160254 14 bp upstream
Tssr160255 transcription start site region 160255 13 bp downstream
Tssr160256 transcription start site region 160256 100 bp downstream
Tssr160257 transcription start site region 160257 167 bp downstream
Tssr160258 transcription start site region 160258 241 bp downstream
Tssr160259 transcription start site region 160259 258 bp downstream
Tssr160260 transcription start site region 160260 294 bp downstream
Tssr160261 transcription start site region 160261 522 bp downstream
Tssr160262 transcription start site region 160262 557 bp downstream
Tssr160263 transcription start site region 160263 572 bp downstream
Tssr160264 transcription start site region 160264 615 bp downstream
Tssr160265 transcription start site region 160265 657 bp downstream
Tssr160266 transcription start site region 160266 687 bp downstream
Tssr160267 transcription start site region 160267 743 bp downstream
Tssr160268 transcription start site region 160268 902 bp downstream
Tssr160269 transcription start site region 160269 948 bp downstream
Tssr160270 transcription start site region 160270 1087 bp downstream
Tssr160271 transcription start site region 160271 1137 bp downstream
Tssr160272 transcription start site region 160272 1189 bp downstream
Tssr160273 transcription start site region 160273 1216 bp downstream
Tssr160274 transcription start site region 160274 1246 bp downstream
Tssr160275 transcription start site region 160275 1318 bp downstream
Tssr160276 transcription start site region 160276 1409 bp downstream
Tssr160277 transcription start site region 160277 1438 bp downstream
Tssr160278 transcription start site region 160278 1493 bp downstream
Tssr160279 transcription start site region 160279 1513 bp downstream
Tssr160280 transcription start site region 160280 1616 bp downstream
Tssr160281 transcription start site region 160281 1899 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory