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rs33253237 SNP Detail
Summary
  • ID
    rs33253237
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:3155 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TTTTATTTAT TTTAGCAACA TCTAGCCTAT CAGTTTACTC
CATTCTATGA TCAGGATGAG CCTCAAACTC CAAATACTCA CTATTCGGAG CTTTACGAGC
Y
GTAGCCCAAA CAATTTCATA TGAAGTAACC ATAGCTATTA TCCTTTTATC AGTTCTATTA
ATAAATGGAT CCTACTCTCT ACAAACACTT ATTACAACCC                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46790955 NES10981313 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C T C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33253237 SNP C C C C C C C C C C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790955 NES10981313 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3155 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 759 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 480 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1863 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 551 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 405 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 690 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1934 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 617 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1795 bp upstream
Tssr160110 transcription start site region 160110 1012 bp downstream
Tssr160111 transcription start site region 160111 993 bp downstream
Tssr160112 transcription start site region 160112 977 bp downstream
Tssr160113 transcription start site region 160113 944 bp downstream
Tssr160114 transcription start site region 160114 896 bp downstream
Tssr160115 transcription start site region 160115 864 bp downstream
Tssr160116 transcription start site region 160116 822 bp downstream
Tssr160117 transcription start site region 160117 799 bp downstream
Tssr160118 transcription start site region 160118 775 bp downstream
Tssr160119 transcription start site region 160119 753 bp downstream
Tssr160120 transcription start site region 160120 727 bp downstream
Tssr160121 transcription start site region 160121 394 bp downstream
Tssr160122 transcription start site region 160122 291 bp downstream
Tssr160123 transcription start site region 160123 96 bp downstream
Tssr160124 transcription start site region 160124 80 bp downstream
Tssr160125 transcription start site region 160125 33 bp downstream
Tssr160126 transcription start site region 160126 16 bp upstream
Tssr160127 transcription start site region 160127 220 bp upstream
Tssr160128 transcription start site region 160128 279 bp upstream
Tssr160129 transcription start site region 160129 751 bp upstream
Tssr160130 transcription start site region 160130 850 bp upstream
Tssr160131 transcription start site region 160131 1073 bp upstream
Tssr160132 transcription start site region 160132 1131 bp upstream
Tssr160133 transcription start site region 160133 1249 bp upstream
Tssr160134 transcription start site region 160134 1511 bp upstream
Tssr160135 transcription start site region 160135 1595 bp upstream
Tssr160136 transcription start site region 160136 1715 bp upstream
Tssr160137 transcription start site region 160137 1860 bp upstream
Tssr160232 transcription start site region 160232 1912 bp upstream
Tssr160233 transcription start site region 160233 1889 bp upstream
Tssr160234 transcription start site region 160234 1856 bp upstream
Tssr160235 transcription start site region 160235 1807 bp upstream
Tssr160236 transcription start site region 160236 1732 bp upstream
Tssr160237 transcription start site region 160237 1700 bp upstream
Tssr160238 transcription start site region 160238 1649 bp upstream
Tssr160239 transcription start site region 160239 1611 bp upstream
Tssr160240 transcription start site region 160240 1536 bp upstream
Tssr160241 transcription start site region 160241 1502 bp upstream
Tssr160242 transcription start site region 160242 1210 bp upstream
Tssr160243 transcription start site region 160243 1146 bp upstream
Tssr160244 transcription start site region 160244 1099 bp upstream
Tssr160245 transcription start site region 160245 1046 bp upstream
Tssr160246 transcription start site region 160246 973 bp upstream
Tssr160247 transcription start site region 160247 875 bp upstream
Tssr160248 transcription start site region 160248 801 bp upstream
Tssr160249 transcription start site region 160249 766 bp upstream
Tssr160250 transcription start site region 160250 727 bp upstream
Tssr160251 transcription start site region 160251 651 bp upstream
Tssr160252 transcription start site region 160252 300 bp upstream
Tssr160253 transcription start site region 160253 107 bp upstream
Tssr160254 transcription start site region 160254 29 bp upstream
Tssr160255 transcription start site region 160255 within coordinates
Tssr160256 transcription start site region 160256 85 bp downstream
Tssr160257 transcription start site region 160257 152 bp downstream
Tssr160258 transcription start site region 160258 226 bp downstream
Tssr160259 transcription start site region 160259 243 bp downstream
Tssr160260 transcription start site region 160260 279 bp downstream
Tssr160261 transcription start site region 160261 507 bp downstream
Tssr160262 transcription start site region 160262 542 bp downstream
Tssr160263 transcription start site region 160263 557 bp downstream
Tssr160264 transcription start site region 160264 600 bp downstream
Tssr160265 transcription start site region 160265 642 bp downstream
Tssr160266 transcription start site region 160266 672 bp downstream
Tssr160267 transcription start site region 160267 728 bp downstream
Tssr160268 transcription start site region 160268 887 bp downstream
Tssr160269 transcription start site region 160269 933 bp downstream
Tssr160270 transcription start site region 160270 1072 bp downstream
Tssr160271 transcription start site region 160271 1122 bp downstream
Tssr160272 transcription start site region 160272 1174 bp downstream
Tssr160273 transcription start site region 160273 1201 bp downstream
Tssr160274 transcription start site region 160274 1231 bp downstream
Tssr160275 transcription start site region 160275 1303 bp downstream
Tssr160276 transcription start site region 160276 1394 bp downstream
Tssr160277 transcription start site region 160277 1423 bp downstream
Tssr160278 transcription start site region 160278 1478 bp downstream
Tssr160279 transcription start site region 160279 1498 bp downstream
Tssr160280 transcription start site region 160280 1601 bp downstream
Tssr160281 transcription start site region 160281 1884 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory