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rs33253240 SNP Detail
Summary
  • ID
    rs33253240
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:3220 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AACTCCAAAT ACTCACTATT CGGAGCTTTA CGAGCCGTAG
CCCAAACAAT TTCATATGAA GTAACCATAG CTATTATCCT TTTATCAGTT CTATTAATAA
R
TGGATCCTAC TCTCTACAAA CACTTATTAC AACCCAAGAA CACATATGAT TACTTCTGCC
AGCCTGACCC ATAGCCATAA TATGATTTAT CTCAACCCTA                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46790958 NES10981314 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33253240 SNP A A A A A A G A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790958 NES10981314 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3220 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 694 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 545 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1798 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1972 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 486 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 470 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 625 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1869 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 552 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1730 bp upstream
Tssr160110 transcription start site region 160110 1077 bp downstream
Tssr160111 transcription start site region 160111 1058 bp downstream
Tssr160112 transcription start site region 160112 1042 bp downstream
Tssr160113 transcription start site region 160113 1009 bp downstream
Tssr160114 transcription start site region 160114 961 bp downstream
Tssr160115 transcription start site region 160115 929 bp downstream
Tssr160116 transcription start site region 160116 887 bp downstream
Tssr160117 transcription start site region 160117 864 bp downstream
Tssr160118 transcription start site region 160118 840 bp downstream
Tssr160119 transcription start site region 160119 818 bp downstream
Tssr160120 transcription start site region 160120 792 bp downstream
Tssr160121 transcription start site region 160121 459 bp downstream
Tssr160122 transcription start site region 160122 356 bp downstream
Tssr160123 transcription start site region 160123 161 bp downstream
Tssr160124 transcription start site region 160124 145 bp downstream
Tssr160125 transcription start site region 160125 98 bp downstream
Tssr160126 transcription start site region 160126 38 bp downstream
Tssr160127 transcription start site region 160127 155 bp upstream
Tssr160128 transcription start site region 160128 214 bp upstream
Tssr160129 transcription start site region 160129 686 bp upstream
Tssr160130 transcription start site region 160130 785 bp upstream
Tssr160131 transcription start site region 160131 1008 bp upstream
Tssr160132 transcription start site region 160132 1066 bp upstream
Tssr160133 transcription start site region 160133 1184 bp upstream
Tssr160134 transcription start site region 160134 1446 bp upstream
Tssr160135 transcription start site region 160135 1530 bp upstream
Tssr160136 transcription start site region 160136 1650 bp upstream
Tssr160137 transcription start site region 160137 1795 bp upstream
Tssr160232 transcription start site region 160232 1977 bp upstream
Tssr160233 transcription start site region 160233 1954 bp upstream
Tssr160234 transcription start site region 160234 1921 bp upstream
Tssr160235 transcription start site region 160235 1872 bp upstream
Tssr160236 transcription start site region 160236 1797 bp upstream
Tssr160237 transcription start site region 160237 1765 bp upstream
Tssr160238 transcription start site region 160238 1714 bp upstream
Tssr160239 transcription start site region 160239 1676 bp upstream
Tssr160240 transcription start site region 160240 1601 bp upstream
Tssr160241 transcription start site region 160241 1567 bp upstream
Tssr160242 transcription start site region 160242 1275 bp upstream
Tssr160243 transcription start site region 160243 1211 bp upstream
Tssr160244 transcription start site region 160244 1164 bp upstream
Tssr160245 transcription start site region 160245 1111 bp upstream
Tssr160246 transcription start site region 160246 1038 bp upstream
Tssr160247 transcription start site region 160247 940 bp upstream
Tssr160248 transcription start site region 160248 866 bp upstream
Tssr160249 transcription start site region 160249 831 bp upstream
Tssr160250 transcription start site region 160250 792 bp upstream
Tssr160251 transcription start site region 160251 716 bp upstream
Tssr160252 transcription start site region 160252 365 bp upstream
Tssr160253 transcription start site region 160253 172 bp upstream
Tssr160254 transcription start site region 160254 94 bp upstream
Tssr160255 transcription start site region 160255 55 bp upstream
Tssr160256 transcription start site region 160256 20 bp downstream
Tssr160257 transcription start site region 160257 87 bp downstream
Tssr160258 transcription start site region 160258 161 bp downstream
Tssr160259 transcription start site region 160259 178 bp downstream
Tssr160260 transcription start site region 160260 214 bp downstream
Tssr160261 transcription start site region 160261 442 bp downstream
Tssr160262 transcription start site region 160262 477 bp downstream
Tssr160263 transcription start site region 160263 492 bp downstream
Tssr160264 transcription start site region 160264 535 bp downstream
Tssr160265 transcription start site region 160265 577 bp downstream
Tssr160266 transcription start site region 160266 607 bp downstream
Tssr160267 transcription start site region 160267 663 bp downstream
Tssr160268 transcription start site region 160268 822 bp downstream
Tssr160269 transcription start site region 160269 868 bp downstream
Tssr160270 transcription start site region 160270 1007 bp downstream
Tssr160271 transcription start site region 160271 1057 bp downstream
Tssr160272 transcription start site region 160272 1109 bp downstream
Tssr160273 transcription start site region 160273 1136 bp downstream
Tssr160274 transcription start site region 160274 1166 bp downstream
Tssr160275 transcription start site region 160275 1238 bp downstream
Tssr160276 transcription start site region 160276 1329 bp downstream
Tssr160277 transcription start site region 160277 1358 bp downstream
Tssr160278 transcription start site region 160278 1413 bp downstream
Tssr160279 transcription start site region 160279 1433 bp downstream
Tssr160280 transcription start site region 160280 1536 bp downstream
Tssr160281 transcription start site region 160281 1819 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory