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rs33253243 SNP Detail
Summary
  • ID
    rs33253243
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:3278 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AAGTAACCAT AGCTATTATC CTTTTATCAG TTCTATTAAT
AAATGGATCC TACTCTCTAC AAACACTTAT TACAACCCAA GAACACATAT GATTACTTCT
R
CCAGCCTGAC CCATAGCCAT AATATGATTT ATCTCAACCC TAGCAGAAAC AAACCGGGCC
CCCTTCGACC TGACAGAAGG AGAATCAGAA TTAGTATCAG                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790961 NES10981315 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33253243 SNP G G G G G G A G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790961 NES10981315 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3278 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 636 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 603 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1740 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1914 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 428 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 528 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 567 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1811 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 494 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1672 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1982 bp downstream
Tssr160110 transcription start site region 160110 1135 bp downstream
Tssr160111 transcription start site region 160111 1116 bp downstream
Tssr160112 transcription start site region 160112 1100 bp downstream
Tssr160113 transcription start site region 160113 1067 bp downstream
Tssr160114 transcription start site region 160114 1019 bp downstream
Tssr160115 transcription start site region 160115 987 bp downstream
Tssr160116 transcription start site region 160116 945 bp downstream
Tssr160117 transcription start site region 160117 922 bp downstream
Tssr160118 transcription start site region 160118 898 bp downstream
Tssr160119 transcription start site region 160119 876 bp downstream
Tssr160120 transcription start site region 160120 850 bp downstream
Tssr160121 transcription start site region 160121 517 bp downstream
Tssr160122 transcription start site region 160122 414 bp downstream
Tssr160123 transcription start site region 160123 219 bp downstream
Tssr160124 transcription start site region 160124 203 bp downstream
Tssr160125 transcription start site region 160125 156 bp downstream
Tssr160126 transcription start site region 160126 96 bp downstream
Tssr160127 transcription start site region 160127 97 bp upstream
Tssr160128 transcription start site region 160128 156 bp upstream
Tssr160129 transcription start site region 160129 628 bp upstream
Tssr160130 transcription start site region 160130 727 bp upstream
Tssr160131 transcription start site region 160131 950 bp upstream
Tssr160132 transcription start site region 160132 1008 bp upstream
Tssr160133 transcription start site region 160133 1126 bp upstream
Tssr160134 transcription start site region 160134 1388 bp upstream
Tssr160135 transcription start site region 160135 1472 bp upstream
Tssr160136 transcription start site region 160136 1592 bp upstream
Tssr160137 transcription start site region 160137 1737 bp upstream
Tssr160234 transcription start site region 160234 1979 bp upstream
Tssr160235 transcription start site region 160235 1930 bp upstream
Tssr160236 transcription start site region 160236 1855 bp upstream
Tssr160237 transcription start site region 160237 1823 bp upstream
Tssr160238 transcription start site region 160238 1772 bp upstream
Tssr160239 transcription start site region 160239 1734 bp upstream
Tssr160240 transcription start site region 160240 1659 bp upstream
Tssr160241 transcription start site region 160241 1625 bp upstream
Tssr160242 transcription start site region 160242 1333 bp upstream
Tssr160243 transcription start site region 160243 1269 bp upstream
Tssr160244 transcription start site region 160244 1222 bp upstream
Tssr160245 transcription start site region 160245 1169 bp upstream
Tssr160246 transcription start site region 160246 1096 bp upstream
Tssr160247 transcription start site region 160247 998 bp upstream
Tssr160248 transcription start site region 160248 924 bp upstream
Tssr160249 transcription start site region 160249 889 bp upstream
Tssr160250 transcription start site region 160250 850 bp upstream
Tssr160251 transcription start site region 160251 774 bp upstream
Tssr160252 transcription start site region 160252 423 bp upstream
Tssr160253 transcription start site region 160253 230 bp upstream
Tssr160254 transcription start site region 160254 152 bp upstream
Tssr160255 transcription start site region 160255 113 bp upstream
Tssr160256 transcription start site region 160256 within coordinates
Tssr160257 transcription start site region 160257 29 bp downstream
Tssr160258 transcription start site region 160258 103 bp downstream
Tssr160259 transcription start site region 160259 120 bp downstream
Tssr160260 transcription start site region 160260 156 bp downstream
Tssr160261 transcription start site region 160261 384 bp downstream
Tssr160262 transcription start site region 160262 419 bp downstream
Tssr160263 transcription start site region 160263 434 bp downstream
Tssr160264 transcription start site region 160264 477 bp downstream
Tssr160265 transcription start site region 160265 519 bp downstream
Tssr160266 transcription start site region 160266 549 bp downstream
Tssr160267 transcription start site region 160267 605 bp downstream
Tssr160268 transcription start site region 160268 764 bp downstream
Tssr160269 transcription start site region 160269 810 bp downstream
Tssr160270 transcription start site region 160270 949 bp downstream
Tssr160271 transcription start site region 160271 999 bp downstream
Tssr160272 transcription start site region 160272 1051 bp downstream
Tssr160273 transcription start site region 160273 1078 bp downstream
Tssr160274 transcription start site region 160274 1108 bp downstream
Tssr160275 transcription start site region 160275 1180 bp downstream
Tssr160276 transcription start site region 160276 1271 bp downstream
Tssr160277 transcription start site region 160277 1300 bp downstream
Tssr160278 transcription start site region 160278 1355 bp downstream
Tssr160279 transcription start site region 160279 1375 bp downstream
Tssr160280 transcription start site region 160280 1478 bp downstream
Tssr160281 transcription start site region 160281 1761 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory