rs33253338 SNP Detail

Summary

• ID
  rs33253338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrMT:455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAAACGTG TCAACTATAA ATAAATAAAT AGAATTAAAA
  TCCAACTTAT ATGTGAAAAT TCATTGTTAG GACCTAAACT CAATAACGAA AGTAATTCTA
  R
  TCATTTATAA TACACGACAG CTAAGACCCA AACTGGGATT AGATACCCCA CTATGCTTAG
  CCATAAACCT AAATAATTAA ATTTAACAAA ACTATTTGCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46790874	NES10981277	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33253338					SNP	G	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790874	NES10981277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:455 () rs orientation: forward

Symbol	Name	Function Class
mt-Rnr1	mitochondrially encoded 12S rRNA	Noncoding-Transcript-Variant
mt-Rnr2	mitochondrially encoded 16S rRNA	639 bp upstream
mt-Tf	mitochondrially encoded tRNA phenylalanine	387 bp downstream
mt-Tv	mitochondrially encoded tRNA valine	570 bp upstream
Tssr160106	transcription start site region 160106	376 bp downstream
Tssr160107	transcription start site region 160107	32 bp upstream
Tssr160108	transcription start site region 160108	137 bp upstream
Tssr160109	transcription start site region 160109	632 bp upstream
Tssr160110	transcription start site region 160110	1677 bp upstream
Tssr160111	transcription start site region 160111	1696 bp upstream
Tssr160112	transcription start site region 160112	1711 bp upstream
Tssr160113	transcription start site region 160113	1745 bp upstream
Tssr160114	transcription start site region 160114	1795 bp upstream
Tssr160115	transcription start site region 160115	1825 bp upstream
Tssr160116	transcription start site region 160116	1867 bp upstream
Tssr160117	transcription start site region 160117	1890 bp upstream
Tssr160118	transcription start site region 160118	1914 bp upstream
Tssr160119	transcription start site region 160119	1936 bp upstream
Tssr160120	transcription start site region 160120	1964 bp upstream
Tssr160216	transcription start site region 160216	142 bp upstream
Tssr160217	transcription start site region 160217	88 bp upstream
Tssr160218	transcription start site region 160218	61 bp upstream
Tssr160219	transcription start site region 160219	45 bp upstream
Tssr160220	transcription start site region 160220	9 bp upstream
Tssr160221	transcription start site region 160221	within coordinates
Tssr160222	transcription start site region 160222	75 bp downstream
Tssr160223	transcription start site region 160223	115 bp downstream
Tssr160224	transcription start site region 160224	175 bp downstream
Tssr160225	transcription start site region 160225	224 bp downstream
Tssr160226	transcription start site region 160226	277 bp downstream
Tssr160227	transcription start site region 160227	292 bp downstream
Tssr160228	transcription start site region 160228	306 bp downstream
Tssr160229	transcription start site region 160229	380 bp downstream
Tssr160230	transcription start site region 160230	392 bp downstream
Tssr160231	transcription start site region 160231	417 bp downstream
Tssr160232	transcription start site region 160232	766 bp downstream
Tssr160233	transcription start site region 160233	793 bp downstream
Tssr160234	transcription start site region 160234	833 bp downstream
Tssr160235	transcription start site region 160235	872 bp downstream
Tssr160236	transcription start site region 160236	956 bp downstream
Tssr160237	transcription start site region 160237	993 bp downstream
Tssr160238	transcription start site region 160238	1044 bp downstream
Tssr160239	transcription start site region 160239	1066 bp downstream
Tssr160240	transcription start site region 160240	1133 bp downstream
Tssr160241	transcription start site region 160241	1187 bp downstream
Tssr160242	transcription start site region 160242	1423 bp downstream
Tssr160243	transcription start site region 160243	1510 bp downstream
Tssr160244	transcription start site region 160244	1569 bp downstream
Tssr160245	transcription start site region 160245	1612 bp downstream
Tssr160246	transcription start site region 160246	1712 bp downstream
Tssr160247	transcription start site region 160247	1803 bp downstream
Tssr160248	transcription start site region 160248	1884 bp downstream
Tssr160249	transcription start site region 160249	1905 bp downstream
Tssr160250	transcription start site region 160250	1964 bp downstream