rs33253340 SNP Detail

Summary

• ID
  rs33253340
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrMT:716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGAGCCTG TTCTATAATC GATAAACCCC GCTCTACCTC
  ACCATCTCTT GCTAATTCAG CCTATATACC GCCATCTTCA GCAAACCCTA AAAAGGTATT
  W
  AAGTAAGCAA AAGAATCAAA CATAAAAACG TTAGGTCAAG GTGTAGCCAA TGAAATGGGA
  AGAAATGGGC TACATTTTCT TATAAAAGAA CATTACTATA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46790877	NES10981278	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33253340					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790877	NES10981278	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:716 () rs orientation: forward

Symbol	Name	Function Class
mt-Rnr1	mitochondrially encoded 12S rRNA	Noncoding-Transcript-Variant
mt-Rnr2	mitochondrially encoded 16S rRNA	378 bp upstream
mt-Tf	mitochondrially encoded tRNA phenylalanine	648 bp downstream
mt-Tl1	mitochondrially encoded tRNA leucine 1	1960 bp upstream
mt-Tv	mitochondrially encoded tRNA valine	309 bp upstream
Tssr160106	transcription start site region 160106	637 bp downstream
Tssr160107	transcription start site region 160107	218 bp downstream
Tssr160108	transcription start site region 160108	113 bp downstream
Tssr160109	transcription start site region 160109	371 bp upstream
Tssr160110	transcription start site region 160110	1416 bp upstream
Tssr160111	transcription start site region 160111	1435 bp upstream
Tssr160112	transcription start site region 160112	1450 bp upstream
Tssr160113	transcription start site region 160113	1484 bp upstream
Tssr160114	transcription start site region 160114	1534 bp upstream
Tssr160115	transcription start site region 160115	1564 bp upstream
Tssr160116	transcription start site region 160116	1606 bp upstream
Tssr160117	transcription start site region 160117	1629 bp upstream
Tssr160118	transcription start site region 160118	1653 bp upstream
Tssr160119	transcription start site region 160119	1675 bp upstream
Tssr160120	transcription start site region 160120	1703 bp upstream
Tssr160216	transcription start site region 160216	403 bp upstream
Tssr160217	transcription start site region 160217	349 bp upstream
Tssr160218	transcription start site region 160218	322 bp upstream
Tssr160219	transcription start site region 160219	306 bp upstream
Tssr160220	transcription start site region 160220	270 bp upstream
Tssr160221	transcription start site region 160221	231 bp upstream
Tssr160222	transcription start site region 160222	183 bp upstream
Tssr160223	transcription start site region 160223	135 bp upstream
Tssr160224	transcription start site region 160224	75 bp upstream
Tssr160225	transcription start site region 160225	28 bp upstream
Tssr160226	transcription start site region 160226	16 bp downstream
Tssr160227	transcription start site region 160227	31 bp downstream
Tssr160228	transcription start site region 160228	45 bp downstream
Tssr160229	transcription start site region 160229	119 bp downstream
Tssr160230	transcription start site region 160230	131 bp downstream
Tssr160231	transcription start site region 160231	156 bp downstream
Tssr160232	transcription start site region 160232	505 bp downstream
Tssr160233	transcription start site region 160233	532 bp downstream
Tssr160234	transcription start site region 160234	572 bp downstream
Tssr160235	transcription start site region 160235	611 bp downstream
Tssr160236	transcription start site region 160236	695 bp downstream
Tssr160237	transcription start site region 160237	732 bp downstream
Tssr160238	transcription start site region 160238	783 bp downstream
Tssr160239	transcription start site region 160239	805 bp downstream
Tssr160240	transcription start site region 160240	872 bp downstream
Tssr160241	transcription start site region 160241	926 bp downstream
Tssr160242	transcription start site region 160242	1162 bp downstream
Tssr160243	transcription start site region 160243	1249 bp downstream
Tssr160244	transcription start site region 160244	1308 bp downstream
Tssr160245	transcription start site region 160245	1351 bp downstream
Tssr160246	transcription start site region 160246	1451 bp downstream
Tssr160247	transcription start site region 160247	1542 bp downstream
Tssr160248	transcription start site region 160248	1623 bp downstream
Tssr160249	transcription start site region 160249	1644 bp downstream
Tssr160250	transcription start site region 160250	1703 bp downstream
Tssr160251	transcription start site region 160251	1750 bp downstream