rs33253727 SNP Detail

Summary

• ID
  rs33253727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:111159811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTGAAC TCACGTTCCT
  TTGTTTGTGT GGCAGATAAT TTTCCTTACT AAATCAGCCA TTAAAACCCT TTATATGTAC
  TCCCACAGCA CTTCTTACAT TTTCTAAAGT CTATGTAAAC TTTTGCTCTC CCCTTCTTGT
  CTTTAAGATC CCCGCCCCAA AAAAAACCTA AGTTCTTTCT ATGAATAGCA GTCATCTTCC
  Y
  AGTCATTTAA TTGCTTTTAT TAATACTTTG GTATGAATGA ATTAAAAAGA ATGAGAAATG
  AATGGTCATT AAATACTTTG TATTTTTTTC TTCAGTCAGT AAAAGAAACT TATAAGCCTC
  AAATATTCTT TGAGGATGTT TGGCCCTTAA TGAATTTAAT ATTGATATTT TACTCTGGTA
  TATCATTAAG ATGTCCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49462404	NES12785941	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33253727					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49462404	NES12785941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:111159811 () rs orientation: forward

Symbol	Name	Function Class
Rr371846	regulatory region 371846	1730 bp upstream