rs33253930 SNP Detail

Summary

• ID
  rs33253930
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56783902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT GGGCATTAAA AAAAATTTTT
  W
  AAAAGTGGGG GTGGGGCTCA AAATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39513094	mCV22729180	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss145807320	ENSMUSSNP4878943	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs33253930					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56783902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9362	CpG island 9362	143 bp distal
Gm9258	predicted gene 9258	458 bp upstream
Gm32822	predicted gene, 32822	within coordinates
Ptprs	protein tyrosine phosphatase receptor type S	422 bp upstream
Tssr148809	transcription start site region 148809	442 bp upstream
Tssr148810	transcription start site region 148810	422 bp upstream
Tssr148811	transcription start site region 148811	409 bp upstream
Tssr148812	transcription start site region 148812	385 bp upstream