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rs33254096 SNP Detail
Summary
  • ID
    rs33254096
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:3329 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACTCTCTACA AACACTTATT ACAACCCAAG AACACATATG
ATTACTTCTG CCAGCCTGAC CCATAGCCAT AATATGATTT ATCTCAACCC TAGCAGAAAC
W
AACCGGGCCC CCTTCGACCT GACAGAAGGA GAATCAGAAT TAGTATCAGG GTTTAACGTA
GAATACGCAG CCGGCCCATT CGCGTTATTC TTTATAGCAG                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46790964 NES10981316 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A T A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33254096 SNP A A A A A A A A A A T A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790964 NES10981316 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3329 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1999 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 585 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 654 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1689 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1863 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 377 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 579 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 516 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1760 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 443 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1621 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1931 bp downstream
Tssr160110 transcription start site region 160110 1186 bp downstream
Tssr160111 transcription start site region 160111 1167 bp downstream
Tssr160112 transcription start site region 160112 1151 bp downstream
Tssr160113 transcription start site region 160113 1118 bp downstream
Tssr160114 transcription start site region 160114 1070 bp downstream
Tssr160115 transcription start site region 160115 1038 bp downstream
Tssr160116 transcription start site region 160116 996 bp downstream
Tssr160117 transcription start site region 160117 973 bp downstream
Tssr160118 transcription start site region 160118 949 bp downstream
Tssr160119 transcription start site region 160119 927 bp downstream
Tssr160120 transcription start site region 160120 901 bp downstream
Tssr160121 transcription start site region 160121 568 bp downstream
Tssr160122 transcription start site region 160122 465 bp downstream
Tssr160123 transcription start site region 160123 270 bp downstream
Tssr160124 transcription start site region 160124 254 bp downstream
Tssr160125 transcription start site region 160125 207 bp downstream
Tssr160126 transcription start site region 160126 147 bp downstream
Tssr160127 transcription start site region 160127 46 bp upstream
Tssr160128 transcription start site region 160128 105 bp upstream
Tssr160129 transcription start site region 160129 577 bp upstream
Tssr160130 transcription start site region 160130 676 bp upstream
Tssr160131 transcription start site region 160131 899 bp upstream
Tssr160132 transcription start site region 160132 957 bp upstream
Tssr160133 transcription start site region 160133 1075 bp upstream
Tssr160134 transcription start site region 160134 1337 bp upstream
Tssr160135 transcription start site region 160135 1421 bp upstream
Tssr160136 transcription start site region 160136 1541 bp upstream
Tssr160137 transcription start site region 160137 1686 bp upstream
Tssr160138 transcription start site region 160138 1990 bp upstream
Tssr160235 transcription start site region 160235 1981 bp upstream
Tssr160236 transcription start site region 160236 1906 bp upstream
Tssr160237 transcription start site region 160237 1874 bp upstream
Tssr160238 transcription start site region 160238 1823 bp upstream
Tssr160239 transcription start site region 160239 1785 bp upstream
Tssr160240 transcription start site region 160240 1710 bp upstream
Tssr160241 transcription start site region 160241 1676 bp upstream
Tssr160242 transcription start site region 160242 1384 bp upstream
Tssr160243 transcription start site region 160243 1320 bp upstream
Tssr160244 transcription start site region 160244 1273 bp upstream
Tssr160245 transcription start site region 160245 1220 bp upstream
Tssr160246 transcription start site region 160246 1147 bp upstream
Tssr160247 transcription start site region 160247 1049 bp upstream
Tssr160248 transcription start site region 160248 975 bp upstream
Tssr160249 transcription start site region 160249 940 bp upstream
Tssr160250 transcription start site region 160250 901 bp upstream
Tssr160251 transcription start site region 160251 825 bp upstream
Tssr160252 transcription start site region 160252 474 bp upstream
Tssr160253 transcription start site region 160253 281 bp upstream
Tssr160254 transcription start site region 160254 203 bp upstream
Tssr160255 transcription start site region 160255 164 bp upstream
Tssr160256 transcription start site region 160256 47 bp upstream
Tssr160257 transcription start site region 160257 within coordinates
Tssr160258 transcription start site region 160258 52 bp downstream
Tssr160259 transcription start site region 160259 69 bp downstream
Tssr160260 transcription start site region 160260 105 bp downstream
Tssr160261 transcription start site region 160261 333 bp downstream
Tssr160262 transcription start site region 160262 368 bp downstream
Tssr160263 transcription start site region 160263 383 bp downstream
Tssr160264 transcription start site region 160264 426 bp downstream
Tssr160265 transcription start site region 160265 468 bp downstream
Tssr160266 transcription start site region 160266 498 bp downstream
Tssr160267 transcription start site region 160267 554 bp downstream
Tssr160268 transcription start site region 160268 713 bp downstream
Tssr160269 transcription start site region 160269 759 bp downstream
Tssr160270 transcription start site region 160270 898 bp downstream
Tssr160271 transcription start site region 160271 948 bp downstream
Tssr160272 transcription start site region 160272 1000 bp downstream
Tssr160273 transcription start site region 160273 1027 bp downstream
Tssr160274 transcription start site region 160274 1057 bp downstream
Tssr160275 transcription start site region 160275 1129 bp downstream
Tssr160276 transcription start site region 160276 1220 bp downstream
Tssr160277 transcription start site region 160277 1249 bp downstream
Tssr160278 transcription start site region 160278 1304 bp downstream
Tssr160279 transcription start site region 160279 1324 bp downstream
Tssr160280 transcription start site region 160280 1427 bp downstream
Tssr160281 transcription start site region 160281 1710 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory