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rs33254099 SNP Detail
Summary
  • ID
    rs33254099
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:3350 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CAACCCAAGA ACACATATGA TTACTTCTGC CAGCCTGACC
CATAGCCATA ATATGATTTA TCTCAACCCT AGCAGAAACA AACCGGGCCC CCTTCGACCT
R
ACAGAAGGAG AATCAGAATT AGTATCAGGG TTTAACGTAG AATACGCAGC CGGCCCATTC
GCGTTATTCT TTATAGCAGA GTACACTAAC ATTATTCTAA                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790967 NES10981317 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33254099 SNP G G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790967 NES10981317 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3350 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1978 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 564 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 675 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1668 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1842 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 356 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 600 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 495 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1739 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 422 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1600 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1910 bp downstream
Tssr160110 transcription start site region 160110 1207 bp downstream
Tssr160111 transcription start site region 160111 1188 bp downstream
Tssr160112 transcription start site region 160112 1172 bp downstream
Tssr160113 transcription start site region 160113 1139 bp downstream
Tssr160114 transcription start site region 160114 1091 bp downstream
Tssr160115 transcription start site region 160115 1059 bp downstream
Tssr160116 transcription start site region 160116 1017 bp downstream
Tssr160117 transcription start site region 160117 994 bp downstream
Tssr160118 transcription start site region 160118 970 bp downstream
Tssr160119 transcription start site region 160119 948 bp downstream
Tssr160120 transcription start site region 160120 922 bp downstream
Tssr160121 transcription start site region 160121 589 bp downstream
Tssr160122 transcription start site region 160122 486 bp downstream
Tssr160123 transcription start site region 160123 291 bp downstream
Tssr160124 transcription start site region 160124 275 bp downstream
Tssr160125 transcription start site region 160125 228 bp downstream
Tssr160126 transcription start site region 160126 168 bp downstream
Tssr160127 transcription start site region 160127 25 bp upstream
Tssr160128 transcription start site region 160128 84 bp upstream
Tssr160129 transcription start site region 160129 556 bp upstream
Tssr160130 transcription start site region 160130 655 bp upstream
Tssr160131 transcription start site region 160131 878 bp upstream
Tssr160132 transcription start site region 160132 936 bp upstream
Tssr160133 transcription start site region 160133 1054 bp upstream
Tssr160134 transcription start site region 160134 1316 bp upstream
Tssr160135 transcription start site region 160135 1400 bp upstream
Tssr160136 transcription start site region 160136 1520 bp upstream
Tssr160137 transcription start site region 160137 1665 bp upstream
Tssr160138 transcription start site region 160138 1969 bp upstream
Tssr160236 transcription start site region 160236 1927 bp upstream
Tssr160237 transcription start site region 160237 1895 bp upstream
Tssr160238 transcription start site region 160238 1844 bp upstream
Tssr160239 transcription start site region 160239 1806 bp upstream
Tssr160240 transcription start site region 160240 1731 bp upstream
Tssr160241 transcription start site region 160241 1697 bp upstream
Tssr160242 transcription start site region 160242 1405 bp upstream
Tssr160243 transcription start site region 160243 1341 bp upstream
Tssr160244 transcription start site region 160244 1294 bp upstream
Tssr160245 transcription start site region 160245 1241 bp upstream
Tssr160246 transcription start site region 160246 1168 bp upstream
Tssr160247 transcription start site region 160247 1070 bp upstream
Tssr160248 transcription start site region 160248 996 bp upstream
Tssr160249 transcription start site region 160249 961 bp upstream
Tssr160250 transcription start site region 160250 922 bp upstream
Tssr160251 transcription start site region 160251 846 bp upstream
Tssr160252 transcription start site region 160252 495 bp upstream
Tssr160253 transcription start site region 160253 302 bp upstream
Tssr160254 transcription start site region 160254 224 bp upstream
Tssr160255 transcription start site region 160255 185 bp upstream
Tssr160256 transcription start site region 160256 68 bp upstream
Tssr160257 transcription start site region 160257 13 bp upstream
Tssr160258 transcription start site region 160258 31 bp downstream
Tssr160259 transcription start site region 160259 48 bp downstream
Tssr160260 transcription start site region 160260 84 bp downstream
Tssr160261 transcription start site region 160261 312 bp downstream
Tssr160262 transcription start site region 160262 347 bp downstream
Tssr160263 transcription start site region 160263 362 bp downstream
Tssr160264 transcription start site region 160264 405 bp downstream
Tssr160265 transcription start site region 160265 447 bp downstream
Tssr160266 transcription start site region 160266 477 bp downstream
Tssr160267 transcription start site region 160267 533 bp downstream
Tssr160268 transcription start site region 160268 692 bp downstream
Tssr160269 transcription start site region 160269 738 bp downstream
Tssr160270 transcription start site region 160270 877 bp downstream
Tssr160271 transcription start site region 160271 927 bp downstream
Tssr160272 transcription start site region 160272 979 bp downstream
Tssr160273 transcription start site region 160273 1006 bp downstream
Tssr160274 transcription start site region 160274 1036 bp downstream
Tssr160275 transcription start site region 160275 1108 bp downstream
Tssr160276 transcription start site region 160276 1199 bp downstream
Tssr160277 transcription start site region 160277 1228 bp downstream
Tssr160278 transcription start site region 160278 1283 bp downstream
Tssr160279 transcription start site region 160279 1303 bp downstream
Tssr160280 transcription start site region 160280 1406 bp downstream
Tssr160281 transcription start site region 160281 1689 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory