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rs33254102 SNP Detail
Summary
  • ID
    rs33254102
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:3362 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACATATGATT ACTTCTGCCA GCCTGACCCA TAGCCATAAT
ATGATTTATC TCAACCCTAG CAGAAACAAA CCGGGCCCCC TTCGACCTGA CAGAAGGAGA
R
TCAGAATTAG TATCAGGGTT TAACGTAGAA TACGCAGCCG GCCCATTCGC GTTATTCTTT
ATAGCAGAGT ACACTAACAT TATTCTAATA AACGCCCTAA                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790970 NES10981318 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33254102 SNP A A A A A A G A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790970 NES10981318 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3362 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1966 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 552 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 687 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1656 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1830 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 344 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 612 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 483 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1727 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 410 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1588 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1898 bp downstream
Tssr160110 transcription start site region 160110 1219 bp downstream
Tssr160111 transcription start site region 160111 1200 bp downstream
Tssr160112 transcription start site region 160112 1184 bp downstream
Tssr160113 transcription start site region 160113 1151 bp downstream
Tssr160114 transcription start site region 160114 1103 bp downstream
Tssr160115 transcription start site region 160115 1071 bp downstream
Tssr160116 transcription start site region 160116 1029 bp downstream
Tssr160117 transcription start site region 160117 1006 bp downstream
Tssr160118 transcription start site region 160118 982 bp downstream
Tssr160119 transcription start site region 160119 960 bp downstream
Tssr160120 transcription start site region 160120 934 bp downstream
Tssr160121 transcription start site region 160121 601 bp downstream
Tssr160122 transcription start site region 160122 498 bp downstream
Tssr160123 transcription start site region 160123 303 bp downstream
Tssr160124 transcription start site region 160124 287 bp downstream
Tssr160125 transcription start site region 160125 240 bp downstream
Tssr160126 transcription start site region 160126 180 bp downstream
Tssr160127 transcription start site region 160127 13 bp upstream
Tssr160128 transcription start site region 160128 72 bp upstream
Tssr160129 transcription start site region 160129 544 bp upstream
Tssr160130 transcription start site region 160130 643 bp upstream
Tssr160131 transcription start site region 160131 866 bp upstream
Tssr160132 transcription start site region 160132 924 bp upstream
Tssr160133 transcription start site region 160133 1042 bp upstream
Tssr160134 transcription start site region 160134 1304 bp upstream
Tssr160135 transcription start site region 160135 1388 bp upstream
Tssr160136 transcription start site region 160136 1508 bp upstream
Tssr160137 transcription start site region 160137 1653 bp upstream
Tssr160138 transcription start site region 160138 1957 bp upstream
Tssr160139 transcription start site region 160139 1996 bp upstream
Tssr160236 transcription start site region 160236 1939 bp upstream
Tssr160237 transcription start site region 160237 1907 bp upstream
Tssr160238 transcription start site region 160238 1856 bp upstream
Tssr160239 transcription start site region 160239 1818 bp upstream
Tssr160240 transcription start site region 160240 1743 bp upstream
Tssr160241 transcription start site region 160241 1709 bp upstream
Tssr160242 transcription start site region 160242 1417 bp upstream
Tssr160243 transcription start site region 160243 1353 bp upstream
Tssr160244 transcription start site region 160244 1306 bp upstream
Tssr160245 transcription start site region 160245 1253 bp upstream
Tssr160246 transcription start site region 160246 1180 bp upstream
Tssr160247 transcription start site region 160247 1082 bp upstream
Tssr160248 transcription start site region 160248 1008 bp upstream
Tssr160249 transcription start site region 160249 973 bp upstream
Tssr160250 transcription start site region 160250 934 bp upstream
Tssr160251 transcription start site region 160251 858 bp upstream
Tssr160252 transcription start site region 160252 507 bp upstream
Tssr160253 transcription start site region 160253 314 bp upstream
Tssr160254 transcription start site region 160254 236 bp upstream
Tssr160255 transcription start site region 160255 197 bp upstream
Tssr160256 transcription start site region 160256 80 bp upstream
Tssr160257 transcription start site region 160257 25 bp upstream
Tssr160258 transcription start site region 160258 19 bp downstream
Tssr160259 transcription start site region 160259 36 bp downstream
Tssr160260 transcription start site region 160260 72 bp downstream
Tssr160261 transcription start site region 160261 300 bp downstream
Tssr160262 transcription start site region 160262 335 bp downstream
Tssr160263 transcription start site region 160263 350 bp downstream
Tssr160264 transcription start site region 160264 393 bp downstream
Tssr160265 transcription start site region 160265 435 bp downstream
Tssr160266 transcription start site region 160266 465 bp downstream
Tssr160267 transcription start site region 160267 521 bp downstream
Tssr160268 transcription start site region 160268 680 bp downstream
Tssr160269 transcription start site region 160269 726 bp downstream
Tssr160270 transcription start site region 160270 865 bp downstream
Tssr160271 transcription start site region 160271 915 bp downstream
Tssr160272 transcription start site region 160272 967 bp downstream
Tssr160273 transcription start site region 160273 994 bp downstream
Tssr160274 transcription start site region 160274 1024 bp downstream
Tssr160275 transcription start site region 160275 1096 bp downstream
Tssr160276 transcription start site region 160276 1187 bp downstream
Tssr160277 transcription start site region 160277 1216 bp downstream
Tssr160278 transcription start site region 160278 1271 bp downstream
Tssr160279 transcription start site region 160279 1291 bp downstream
Tssr160280 transcription start site region 160280 1394 bp downstream
Tssr160281 transcription start site region 160281 1677 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory