rs33254235 SNP Detail

Summary

• ID
  rs33254235
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrMT:947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAGTAGTA AATTAAGAAT AGAGAGCTTA ATTGAATTGA
  GCAATGAAGT ACGCACACAC CGCCCGTCAC CCTCCTCAAA TTAAATTAAA CTTAACATAA
  W
  TAATTTCTAG ACATCCGTTT ATGAGAGGAG ATAAGTCGTA ACAAGGTAAG CATACTGGAA
  AGTGTGCTTG GAATAATCAT AGTGTAGCTT AATATTAAAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46790883	NES10981280	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33254235					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790883	NES10981280	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:947 () rs orientation: forward

Symbol	Name	Function Class
mt-Nd1	mitochondrially encoded NADH dehydrogenase 1	1804 bp upstream
mt-Rnr1	mitochondrially encoded 12S rRNA	within coordinates
mt-Rnr2	mitochondrially encoded 16S rRNA	147 bp upstream
mt-Tf	mitochondrially encoded tRNA phenylalanine	879 bp downstream
mt-Tl1	mitochondrially encoded tRNA leucine 1	1729 bp upstream
mt-Tv	mitochondrially encoded tRNA valine	78 bp upstream
Tssr160106	transcription start site region 160106	868 bp downstream
Tssr160107	transcription start site region 160107	449 bp downstream
Tssr160108	transcription start site region 160108	344 bp downstream
Tssr160109	transcription start site region 160109	140 bp upstream
Tssr160110	transcription start site region 160110	1185 bp upstream
Tssr160111	transcription start site region 160111	1204 bp upstream
Tssr160112	transcription start site region 160112	1219 bp upstream
Tssr160113	transcription start site region 160113	1253 bp upstream
Tssr160114	transcription start site region 160114	1303 bp upstream
Tssr160115	transcription start site region 160115	1333 bp upstream
Tssr160116	transcription start site region 160116	1375 bp upstream
Tssr160117	transcription start site region 160117	1398 bp upstream
Tssr160118	transcription start site region 160118	1422 bp upstream
Tssr160119	transcription start site region 160119	1444 bp upstream
Tssr160120	transcription start site region 160120	1472 bp upstream
Tssr160121	transcription start site region 160121	1796 bp upstream
Tssr160122	transcription start site region 160122	1906 bp upstream
Tssr160216	transcription start site region 160216	634 bp upstream
Tssr160217	transcription start site region 160217	580 bp upstream
Tssr160218	transcription start site region 160218	553 bp upstream
Tssr160219	transcription start site region 160219	537 bp upstream
Tssr160220	transcription start site region 160220	501 bp upstream
Tssr160221	transcription start site region 160221	462 bp upstream
Tssr160222	transcription start site region 160222	414 bp upstream
Tssr160223	transcription start site region 160223	366 bp upstream
Tssr160224	transcription start site region 160224	306 bp upstream
Tssr160225	transcription start site region 160225	259 bp upstream
Tssr160226	transcription start site region 160226	206 bp upstream
Tssr160227	transcription start site region 160227	195 bp upstream
Tssr160228	transcription start site region 160228	159 bp upstream
Tssr160229	transcription start site region 160229	101 bp upstream
Tssr160230	transcription start site region 160230	93 bp upstream
Tssr160231	transcription start site region 160231	63 bp upstream
Tssr160232	transcription start site region 160232	274 bp downstream
Tssr160233	transcription start site region 160233	301 bp downstream
Tssr160234	transcription start site region 160234	341 bp downstream
Tssr160235	transcription start site region 160235	380 bp downstream
Tssr160236	transcription start site region 160236	464 bp downstream
Tssr160237	transcription start site region 160237	501 bp downstream
Tssr160238	transcription start site region 160238	552 bp downstream
Tssr160239	transcription start site region 160239	574 bp downstream
Tssr160240	transcription start site region 160240	641 bp downstream
Tssr160241	transcription start site region 160241	695 bp downstream
Tssr160242	transcription start site region 160242	931 bp downstream
Tssr160243	transcription start site region 160243	1018 bp downstream
Tssr160244	transcription start site region 160244	1077 bp downstream
Tssr160245	transcription start site region 160245	1120 bp downstream
Tssr160246	transcription start site region 160246	1220 bp downstream
Tssr160247	transcription start site region 160247	1311 bp downstream
Tssr160248	transcription start site region 160248	1392 bp downstream
Tssr160249	transcription start site region 160249	1413 bp downstream
Tssr160250	transcription start site region 160250	1472 bp downstream
Tssr160251	transcription start site region 160251	1519 bp downstream
Tssr160252	transcription start site region 160252	1897 bp downstream