rs33254239 SNP Detail

Summary

• ID
  rs33254239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrMT:1084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTAACAAGG TAAGCATACT GGAAAGTGTG CTTGGAATAA
  TCATAGTGTA GCTTAATATT AAAGCATCTG GCCTACACCC AGAAGATTTC ATGACCAATG
  R
  ACACTCTGAA CTAATCCTAG CCCTAGCCCT ACACAAATAT AATTATACTA TTATATAAAT
  CAAAACATTT ATCCTACTAA AAGTATTGGA GAAAGAAATT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46790889	NES10981282	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33254239					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790889	NES10981282	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:1084 () rs orientation: forward

Symbol	Name	Function Class
mt-Nd1	mitochondrially encoded NADH dehydrogenase 1	1667 bp upstream
mt-Rnr1	mitochondrially encoded 12S rRNA	60 bp downstream
mt-Rnr2	mitochondrially encoded 16S rRNA	10 bp upstream
mt-Tf	mitochondrially encoded tRNA phenylalanine	1016 bp downstream
mt-Tl1	mitochondrially encoded tRNA leucine 1	1592 bp upstream
mt-Tv	mitochondrially encoded tRNA valine	within coordinates
Tssr160106	transcription start site region 160106	1005 bp downstream
Tssr160107	transcription start site region 160107	586 bp downstream
Tssr160108	transcription start site region 160108	481 bp downstream
Tssr160109	transcription start site region 160109	3 bp upstream
Tssr160110	transcription start site region 160110	1048 bp upstream
Tssr160111	transcription start site region 160111	1067 bp upstream
Tssr160112	transcription start site region 160112	1082 bp upstream
Tssr160113	transcription start site region 160113	1116 bp upstream
Tssr160114	transcription start site region 160114	1166 bp upstream
Tssr160115	transcription start site region 160115	1196 bp upstream
Tssr160116	transcription start site region 160116	1238 bp upstream
Tssr160117	transcription start site region 160117	1261 bp upstream
Tssr160118	transcription start site region 160118	1285 bp upstream
Tssr160119	transcription start site region 160119	1307 bp upstream
Tssr160120	transcription start site region 160120	1335 bp upstream
Tssr160121	transcription start site region 160121	1659 bp upstream
Tssr160122	transcription start site region 160122	1769 bp upstream
Tssr160123	transcription start site region 160123	1964 bp upstream
Tssr160124	transcription start site region 160124	1980 bp upstream
Tssr160216	transcription start site region 160216	771 bp upstream
Tssr160217	transcription start site region 160217	717 bp upstream
Tssr160218	transcription start site region 160218	690 bp upstream
Tssr160219	transcription start site region 160219	674 bp upstream
Tssr160220	transcription start site region 160220	638 bp upstream
Tssr160221	transcription start site region 160221	599 bp upstream
Tssr160222	transcription start site region 160222	551 bp upstream
Tssr160223	transcription start site region 160223	503 bp upstream
Tssr160224	transcription start site region 160224	443 bp upstream
Tssr160225	transcription start site region 160225	396 bp upstream
Tssr160226	transcription start site region 160226	343 bp upstream
Tssr160227	transcription start site region 160227	332 bp upstream
Tssr160228	transcription start site region 160228	296 bp upstream
Tssr160229	transcription start site region 160229	238 bp upstream
Tssr160230	transcription start site region 160230	230 bp upstream
Tssr160231	transcription start site region 160231	200 bp upstream
Tssr160232	transcription start site region 160232	137 bp downstream
Tssr160233	transcription start site region 160233	164 bp downstream
Tssr160234	transcription start site region 160234	204 bp downstream
Tssr160235	transcription start site region 160235	243 bp downstream
Tssr160236	transcription start site region 160236	327 bp downstream
Tssr160237	transcription start site region 160237	364 bp downstream
Tssr160238	transcription start site region 160238	415 bp downstream
Tssr160239	transcription start site region 160239	437 bp downstream
Tssr160240	transcription start site region 160240	504 bp downstream
Tssr160241	transcription start site region 160241	558 bp downstream
Tssr160242	transcription start site region 160242	794 bp downstream
Tssr160243	transcription start site region 160243	881 bp downstream
Tssr160244	transcription start site region 160244	940 bp downstream
Tssr160245	transcription start site region 160245	983 bp downstream
Tssr160246	transcription start site region 160246	1083 bp downstream
Tssr160247	transcription start site region 160247	1174 bp downstream
Tssr160248	transcription start site region 160248	1255 bp downstream
Tssr160249	transcription start site region 160249	1276 bp downstream
Tssr160250	transcription start site region 160250	1335 bp downstream
Tssr160251	transcription start site region 160251	1382 bp downstream
Tssr160252	transcription start site region 160252	1760 bp downstream
Tssr160253	transcription start site region 160253	1937 bp downstream