rs33254241 SNP Detail

Summary

• ID
  rs33254241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrMT:1248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACATTTATC CTACTAAAAG TATTGGAGAA AGAAATTCGT
  ACATCTAGGA GCTATAGAAC TAGTACCGCA AGGGAAAGAT GAAAGACTAA TTAAAAGTAA
  R
  AACAAGCAAA GATTAAACCT TGTACCTTTT GCATAATGAA CTAACTAGAA AACTTCTAAC
  TAAAAGAATT ACAGCTAGAA ACCCCGAAAC CAAACGAGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46790892	NES10981283	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33254241					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790892	NES10981283	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:1248 () rs orientation: forward

Symbol	Name	Function Class
mt-Nd1	mitochondrially encoded NADH dehydrogenase 1	1503 bp upstream
mt-Rnr1	mitochondrially encoded 12S rRNA	224 bp downstream
mt-Rnr2	mitochondrially encoded 16S rRNA	within coordinates
mt-Tf	mitochondrially encoded tRNA phenylalanine	1180 bp downstream
mt-Tl1	mitochondrially encoded tRNA leucine 1	1428 bp upstream
mt-Tv	mitochondrially encoded tRNA valine	155 bp downstream
Tssr160106	transcription start site region 160106	1169 bp downstream
Tssr160107	transcription start site region 160107	750 bp downstream
Tssr160108	transcription start site region 160108	645 bp downstream
Tssr160109	transcription start site region 160109	142 bp downstream
Tssr160110	transcription start site region 160110	884 bp upstream
Tssr160111	transcription start site region 160111	903 bp upstream
Tssr160112	transcription start site region 160112	918 bp upstream
Tssr160113	transcription start site region 160113	952 bp upstream
Tssr160114	transcription start site region 160114	1002 bp upstream
Tssr160115	transcription start site region 160115	1032 bp upstream
Tssr160116	transcription start site region 160116	1074 bp upstream
Tssr160117	transcription start site region 160117	1097 bp upstream
Tssr160118	transcription start site region 160118	1121 bp upstream
Tssr160119	transcription start site region 160119	1143 bp upstream
Tssr160120	transcription start site region 160120	1171 bp upstream
Tssr160121	transcription start site region 160121	1495 bp upstream
Tssr160122	transcription start site region 160122	1605 bp upstream
Tssr160123	transcription start site region 160123	1800 bp upstream
Tssr160124	transcription start site region 160124	1816 bp upstream
Tssr160125	transcription start site region 160125	1865 bp upstream
Tssr160126	transcription start site region 160126	1923 bp upstream
Tssr160216	transcription start site region 160216	935 bp upstream
Tssr160217	transcription start site region 160217	881 bp upstream
Tssr160218	transcription start site region 160218	854 bp upstream
Tssr160219	transcription start site region 160219	838 bp upstream
Tssr160220	transcription start site region 160220	802 bp upstream
Tssr160221	transcription start site region 160221	763 bp upstream
Tssr160222	transcription start site region 160222	715 bp upstream
Tssr160223	transcription start site region 160223	667 bp upstream
Tssr160224	transcription start site region 160224	607 bp upstream
Tssr160225	transcription start site region 160225	560 bp upstream
Tssr160226	transcription start site region 160226	507 bp upstream
Tssr160227	transcription start site region 160227	496 bp upstream
Tssr160228	transcription start site region 160228	460 bp upstream
Tssr160229	transcription start site region 160229	402 bp upstream
Tssr160230	transcription start site region 160230	394 bp upstream
Tssr160231	transcription start site region 160231	364 bp upstream
Tssr160232	transcription start site region 160232	5 bp upstream
Tssr160233	transcription start site region 160233	within coordinates
Tssr160234	transcription start site region 160234	40 bp downstream
Tssr160235	transcription start site region 160235	79 bp downstream
Tssr160236	transcription start site region 160236	163 bp downstream
Tssr160237	transcription start site region 160237	200 bp downstream
Tssr160238	transcription start site region 160238	251 bp downstream
Tssr160239	transcription start site region 160239	273 bp downstream
Tssr160240	transcription start site region 160240	340 bp downstream
Tssr160241	transcription start site region 160241	394 bp downstream
Tssr160242	transcription start site region 160242	630 bp downstream
Tssr160243	transcription start site region 160243	717 bp downstream
Tssr160244	transcription start site region 160244	776 bp downstream
Tssr160245	transcription start site region 160245	819 bp downstream
Tssr160246	transcription start site region 160246	919 bp downstream
Tssr160247	transcription start site region 160247	1010 bp downstream
Tssr160248	transcription start site region 160248	1091 bp downstream
Tssr160249	transcription start site region 160249	1112 bp downstream
Tssr160250	transcription start site region 160250	1171 bp downstream
Tssr160251	transcription start site region 160251	1218 bp downstream
Tssr160252	transcription start site region 160252	1596 bp downstream
Tssr160253	transcription start site region 160253	1773 bp downstream
Tssr160254	transcription start site region 160254	1863 bp downstream
Tssr160255	transcription start site region 160255	1905 bp downstream
Tssr160256	transcription start site region 160256	1992 bp downstream