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rs33254243 SNP Detail
Summary
  • ID
    rs33254243
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:1450 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CCTAAAAACA ATTTTATGAA TCAACTCGTC TATGTGGCAA
AATAGTGAGA AGATTTTTAG GTAGAGGTGA AAAGCCTAAC GAGCTTGGTG ATAGCTGGTT
R
CCCAAAAAAT GAATTTAAGT TCAATTTTAA ACTTGCTAAA AAAACAACAA AATCAAAAAG
TAAGTTTAGA TTATAGCCAA AAGAGGGACA GCTCTTCTGG                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790895 NES10981284 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33254243 SNP A A A A A A G A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790895 NES10981284 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:1450 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 1301 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 426 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA within coordinates
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Tf mitochondrially encoded tRNA phenylalanine 1382 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1226 bp upstream
mt-Tv mitochondrially encoded tRNA valine 357 bp downstream
Tssr160106 transcription start site region 160106 1371 bp downstream
Tssr160107 transcription start site region 160107 952 bp downstream
Tssr160108 transcription start site region 160108 847 bp downstream
Tssr160109 transcription start site region 160109 344 bp downstream
Tssr160110 transcription start site region 160110 682 bp upstream
Tssr160111 transcription start site region 160111 701 bp upstream
Tssr160112 transcription start site region 160112 716 bp upstream
Tssr160113 transcription start site region 160113 750 bp upstream
Tssr160114 transcription start site region 160114 800 bp upstream
Tssr160115 transcription start site region 160115 830 bp upstream
Tssr160116 transcription start site region 160116 872 bp upstream
Tssr160117 transcription start site region 160117 895 bp upstream
Tssr160118 transcription start site region 160118 919 bp upstream
Tssr160119 transcription start site region 160119 941 bp upstream
Tssr160120 transcription start site region 160120 969 bp upstream
Tssr160121 transcription start site region 160121 1293 bp upstream
Tssr160122 transcription start site region 160122 1403 bp upstream
Tssr160123 transcription start site region 160123 1598 bp upstream
Tssr160124 transcription start site region 160124 1614 bp upstream
Tssr160125 transcription start site region 160125 1663 bp upstream
Tssr160126 transcription start site region 160126 1721 bp upstream
Tssr160127 transcription start site region 160127 1925 bp upstream
Tssr160128 transcription start site region 160128 1984 bp upstream
Tssr160216 transcription start site region 160216 1137 bp upstream
Tssr160217 transcription start site region 160217 1083 bp upstream
Tssr160218 transcription start site region 160218 1056 bp upstream
Tssr160219 transcription start site region 160219 1040 bp upstream
Tssr160220 transcription start site region 160220 1004 bp upstream
Tssr160221 transcription start site region 160221 965 bp upstream
Tssr160222 transcription start site region 160222 917 bp upstream
Tssr160223 transcription start site region 160223 869 bp upstream
Tssr160224 transcription start site region 160224 809 bp upstream
Tssr160225 transcription start site region 160225 762 bp upstream
Tssr160226 transcription start site region 160226 709 bp upstream
Tssr160227 transcription start site region 160227 698 bp upstream
Tssr160228 transcription start site region 160228 662 bp upstream
Tssr160229 transcription start site region 160229 604 bp upstream
Tssr160230 transcription start site region 160230 596 bp upstream
Tssr160231 transcription start site region 160231 566 bp upstream
Tssr160232 transcription start site region 160232 207 bp upstream
Tssr160233 transcription start site region 160233 184 bp upstream
Tssr160234 transcription start site region 160234 151 bp upstream
Tssr160235 transcription start site region 160235 102 bp upstream
Tssr160236 transcription start site region 160236 27 bp upstream
Tssr160237 transcription start site region 160237 within coordinates
Tssr160238 transcription start site region 160238 49 bp downstream
Tssr160239 transcription start site region 160239 71 bp downstream
Tssr160240 transcription start site region 160240 138 bp downstream
Tssr160241 transcription start site region 160241 192 bp downstream
Tssr160242 transcription start site region 160242 428 bp downstream
Tssr160243 transcription start site region 160243 515 bp downstream
Tssr160244 transcription start site region 160244 574 bp downstream
Tssr160245 transcription start site region 160245 617 bp downstream
Tssr160246 transcription start site region 160246 717 bp downstream
Tssr160247 transcription start site region 160247 808 bp downstream
Tssr160248 transcription start site region 160248 889 bp downstream
Tssr160249 transcription start site region 160249 910 bp downstream
Tssr160250 transcription start site region 160250 969 bp downstream
Tssr160251 transcription start site region 160251 1016 bp downstream
Tssr160252 transcription start site region 160252 1394 bp downstream
Tssr160253 transcription start site region 160253 1571 bp downstream
Tssr160254 transcription start site region 160254 1661 bp downstream
Tssr160255 transcription start site region 160255 1703 bp downstream
Tssr160256 transcription start site region 160256 1790 bp downstream
Tssr160257 transcription start site region 160257 1857 bp downstream
Tssr160258 transcription start site region 160258 1931 bp downstream
Tssr160259 transcription start site region 160259 1948 bp downstream
Tssr160260 transcription start site region 160260 1984 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory