rs33254380 SNP Detail

Summary

• ID
  rs33254380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153002519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTTTTTGG ATCCATCTAA GAAGACCGCA CTGGCTCTTT
  GTACACTTTA CAGTGGTATA TATGAACCAA ACAGTCTTTC TCCATTATGA TCCTTTGAGT
  Y
  CTCCCCAGAC CCTTTTAAGT CAATACTGGA AAGTTAAGTT TAAGATGGTT AAGTGACTTG
  CTTCAAGTCA TACATTAAGC CAGTTAGAAT GGAGAAGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45255931	mCV22911103	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33254380					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153002519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	802 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	518 bp downstream
Rr55859	regulatory region 55859	81 bp proximal
Rr397404	regulatory region 397404	541 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	704 bp upstream
Tssr20873	transcription start site region 20873	693 bp upstream
Tssr20874	transcription start site region 20874	722 bp upstream
Tssr20875	transcription start site region 20875	925 bp upstream
Tssr20876	transcription start site region 20876	1329 bp upstream
Tssr20877	transcription start site region 20877	1359 bp upstream
Tssr26883	transcription start site region 26883	861 bp downstream