rs33254420 SNP Detail

Summary

• ID
  rs33254420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83727720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACAGCCC CTCAGAAAGG
  CAGAGGAAGA AGAGGTGAAG TTTGATGATA GCAAAGCAGA GACCTCTACA CCTGTGTCTA
  CGATGGCTCA GACTTGCCCC CAGCTAGTCT CCATGTGGCT GAGAGAACTT CAGTCAGGGA
  ATACCTTTGT CAAGACACTA GGGCAATGCA GGACCTACTC TGAGTGTAGT TCAAGGAATA
  R
  CCTAGGAAGA AGGGAGAGAC CAAGACACCG TGCTCTGGGA ACCAATCTTT GTGCAGGGTT
  CCAGTTGCTG TGGCAATGTG GGATGAAAAC GATGCTCCCA GAGAGCAGAG TCACTGATTG
  CCCTTATTCT GCAGCCTTCT CTGAAACTGC CCAAAGGACA GAGGAAACCT CAGAGAACCA
  CAGATGCTTA GCCTGGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48283754	NES11749195	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		G	A	A	G		A
ss322295430	CHEV_7_91227022	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33254420					SNP	A	A	A	A	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48283754	NES11749195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83727720 () rs orientation: forward

Symbol	Name	Function Class
Cemip	cell migration inducing protein, hyaluronan binding	within coordinates
Tssr73416	transcription start site region 73416	947 bp upstream