rs33254699 SNP Detail

Summary

• ID
  rs33254699
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85275232 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         AGCCATACT CTTTATATGC TCTGGCTCAA TCATTCATAG
  CCTGGCAGAC GAACAAGACA TCCGAAAAAT AGGAAACATC ACAAAAACCA TACCATTCAC
  M
  TCATCATGCC TAGTAATCGG AAGCCTCGCC CTCACAGGAA TGCCATTCCT AACAGGATTC
  TACTCAAAAG ACCTAATTAT TGAAGCAATT AATACCTGCA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46791528	NES10981533	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		C	A	A	C		A
ss52675564	NES15491877	PERLEGEN	MM_PANEL2	r	SNP	G			T		T	G					G		T			G
ss324460060	CHEV_13_85266718	CHEVERUD	SCREENING_POP	r	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33254699					SNP	?	A	A	A	A	A	?	A	A	A	A	C	A	A	C	A	?

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46791528	NES10981533	PERLEGEN	MM_PANEL	f	SNP	A/C
ss52675564	NES15491877	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85275232 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	within coordinates
Gm4076	predicted gene 4076	within coordinates
Rr388812	regulatory region 388812	within coordinates
Rr483357	regulatory region 483357	within coordinates
Tssr4134	transcription start site region 4134	231 bp downstream
Tssr120547	transcription start site region 120547	523 bp downstream
Tssr120548	transcription start site region 120548	411 bp downstream
Tssr120549	transcription start site region 120549	344 bp downstream
Tssr123349	transcription start site region 123349	474 bp upstream
Tssr123350	transcription start site region 123350	103 bp upstream
Tssr123351	transcription start site region 123351	9 bp upstream
Tssr123352	transcription start site region 123352	280 bp downstream