rs33254715 SNP Detail

Summary

• ID
  rs33254715
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrMT:16154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATAAATGC TACTCAATAC CAAATTTTAA CTCTCCAAAC
  CCCCCACCCC CTCCTCTTAA TGCCAAACCC CAAAAACACT AAGAACTTGA AAGACATATA
  W
  TATTAACTAT CAAACCCTAT GTCCTGATCA ATTCTAGTAG TTCCCAAAAT ATGACTTATA
  TTTTAGTACT TGTAAAAATT TTACAAAATC ATGTTCCGTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46791723	NES10981606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33254715					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46791723	NES10981606	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:16154 () rs orientation: forward

Symbol	Name	Function Class
mt-Cytb	mitochondrially encoded cytochrome b	866 bp downstream
mt-Rr998	mitochondrially encoded regulatory region 998	within coordinates
mt-Rr999	mitochondrially encoded regulatory region 999	154 bp distal
mt-Rr1000	mitochondrially encoded regulatory region 1000	1354 bp distal
mt-Tp	mitochondrially encoded tRNA proline	732 bp upstream
mt-Tt	mitochondrially encoded tRNA threonine	799 bp downstream
Tssr5580	transcription start site region 5580	1730 bp upstream
Tssr160197	transcription start site region 160197	2000 bp downstream
Tssr160198	transcription start site region 160198	1852 bp downstream
Tssr160199	transcription start site region 160199	1597 bp downstream
Tssr160200	transcription start site region 160200	1577 bp downstream
Tssr160201	transcription start site region 160201	1492 bp downstream
Tssr160202	transcription start site region 160202	1476 bp downstream
Tssr160203	transcription start site region 160203	1432 bp downstream
Tssr160204	transcription start site region 160204	1398 bp downstream
Tssr160205	transcription start site region 160205	790 bp downstream
Tssr160206	transcription start site region 160206	724 bp downstream
Tssr160207	transcription start site region 160207	666 bp downstream
Tssr160208	transcription start site region 160208	622 bp downstream
Tssr160209	transcription start site region 160209	565 bp downstream
Tssr160210	transcription start site region 160210	529 bp downstream
Tssr160211	transcription start site region 160211	93 bp downstream
Tssr160212	transcription start site region 160212	61 bp downstream
Tssr160213	transcription start site region 160213	47 bp downstream
Tssr160214	transcription start site region 160214	8 bp downstream
Tssr160215	transcription start site region 160215	68 bp upstream
Tssr160334	transcription start site region 160334	1973 bp upstream
Tssr160335	transcription start site region 160335	1854 bp upstream
Tssr160336	transcription start site region 160336	1611 bp upstream
Tssr160337	transcription start site region 160337	1567 bp upstream
Tssr160338	transcription start site region 160338	1462 bp upstream
Tssr160339	transcription start site region 160339	1371 bp upstream
Tssr160340	transcription start site region 160340	1330 bp upstream
Tssr160341	transcription start site region 160341	1287 bp upstream
Tssr160342	transcription start site region 160342	1267 bp upstream
Tssr160343	transcription start site region 160343	1200 bp upstream
Tssr160344	transcription start site region 160344	1122 bp upstream
Tssr160345	transcription start site region 160345	1101 bp upstream
Tssr160346	transcription start site region 160346	1054 bp upstream
Tssr160347	transcription start site region 160347	789 bp upstream
Tssr160348	transcription start site region 160348	775 bp upstream
Tssr160349	transcription start site region 160349	713 bp upstream
Tssr160350	transcription start site region 160350	487 bp upstream
Tssr160351	transcription start site region 160351	59 bp upstream
Tssr160352	transcription start site region 160352	26 bp downstream