rs33254815 SNP Detail

Summary

• ID
  rs33254815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrMT:3380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCTGACC CATAGCCATA ATATGATTTA TCTCAACCCT
  AGCAGAAACA AACCGGGCCC CCTTCGACCT GACAGAAGGA GAATCAGAAT TAGTATCAGG
  R
  TTTAACGTAG AATACGCAGC CGGCCCATTC GCGTTATTCT TTATAGCAGA GTACACTAAC
  ATTATTCTAA TAAACGCCCT AACAACTATT ATCTTCCTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46790973	NES10981319	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33254815					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790973	NES10981319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:3380 () rs orientation: forward

Symbol	Name	Function Class
mt-Co1	mitochondrially encoded cytochrome c oxidase I	1948 bp upstream
mt-Nd1	mitochondrially encoded NADH dehydrogenase 1	within coordinates
mt-Nd2	mitochondrially encoded NADH dehydrogenase 2	534 bp upstream
mt-Rnr2	mitochondrially encoded 16S rRNA	705 bp downstream
mt-Rr998	mitochondrially encoded regulatory region 998	within coordinates
mt-Ta	mitochondrially encoded tRNA alanine	1638 bp downstream
mt-Tc	mitochondrially encoded tRNA cysteine	1812 bp downstream
mt-Ti	mitochondrially encoded tRNA isoleucine	326 bp upstream
mt-Tl1	mitochondrially encoded tRNA leucine 1	630 bp downstream
mt-Tm	mitochondrially encoded tRNA methionine	465 bp upstream
mt-Tn	mitochondrially encoded tRNA asparagine	1709 bp downstream
mt-Tq	mitochondrially encoded tRNA glutamine	392 bp downstream
mt-Tw	mitochondrially encoded tRNA tryptophan	1570 bp upstream
mt-Ty	mitochondrially encoded tRNA tyrosine	1880 bp downstream
Tssr160110	transcription start site region 160110	1237 bp downstream
Tssr160111	transcription start site region 160111	1218 bp downstream
Tssr160112	transcription start site region 160112	1202 bp downstream
Tssr160113	transcription start site region 160113	1169 bp downstream
Tssr160114	transcription start site region 160114	1121 bp downstream
Tssr160115	transcription start site region 160115	1089 bp downstream
Tssr160116	transcription start site region 160116	1047 bp downstream
Tssr160117	transcription start site region 160117	1024 bp downstream
Tssr160118	transcription start site region 160118	1000 bp downstream
Tssr160119	transcription start site region 160119	978 bp downstream
Tssr160120	transcription start site region 160120	952 bp downstream
Tssr160121	transcription start site region 160121	619 bp downstream
Tssr160122	transcription start site region 160122	516 bp downstream
Tssr160123	transcription start site region 160123	321 bp downstream
Tssr160124	transcription start site region 160124	305 bp downstream
Tssr160125	transcription start site region 160125	258 bp downstream
Tssr160126	transcription start site region 160126	198 bp downstream
Tssr160127	transcription start site region 160127	within coordinates
Tssr160128	transcription start site region 160128	54 bp upstream
Tssr160129	transcription start site region 160129	526 bp upstream
Tssr160130	transcription start site region 160130	625 bp upstream
Tssr160131	transcription start site region 160131	848 bp upstream
Tssr160132	transcription start site region 160132	906 bp upstream
Tssr160133	transcription start site region 160133	1024 bp upstream
Tssr160134	transcription start site region 160134	1286 bp upstream
Tssr160135	transcription start site region 160135	1370 bp upstream
Tssr160136	transcription start site region 160136	1490 bp upstream
Tssr160137	transcription start site region 160137	1635 bp upstream
Tssr160138	transcription start site region 160138	1939 bp upstream
Tssr160139	transcription start site region 160139	1978 bp upstream
Tssr160236	transcription start site region 160236	1957 bp upstream
Tssr160237	transcription start site region 160237	1925 bp upstream
Tssr160238	transcription start site region 160238	1874 bp upstream
Tssr160239	transcription start site region 160239	1836 bp upstream
Tssr160240	transcription start site region 160240	1761 bp upstream
Tssr160241	transcription start site region 160241	1727 bp upstream
Tssr160242	transcription start site region 160242	1435 bp upstream
Tssr160243	transcription start site region 160243	1371 bp upstream
Tssr160244	transcription start site region 160244	1324 bp upstream
Tssr160245	transcription start site region 160245	1271 bp upstream
Tssr160246	transcription start site region 160246	1198 bp upstream
Tssr160247	transcription start site region 160247	1100 bp upstream
Tssr160248	transcription start site region 160248	1026 bp upstream
Tssr160249	transcription start site region 160249	991 bp upstream
Tssr160250	transcription start site region 160250	952 bp upstream
Tssr160251	transcription start site region 160251	876 bp upstream
Tssr160252	transcription start site region 160252	525 bp upstream
Tssr160253	transcription start site region 160253	332 bp upstream
Tssr160254	transcription start site region 160254	254 bp upstream
Tssr160255	transcription start site region 160255	215 bp upstream
Tssr160256	transcription start site region 160256	98 bp upstream
Tssr160257	transcription start site region 160257	43 bp upstream
Tssr160258	transcription start site region 160258	1 bp downstream
Tssr160259	transcription start site region 160259	18 bp downstream
Tssr160260	transcription start site region 160260	54 bp downstream
Tssr160261	transcription start site region 160261	282 bp downstream
Tssr160262	transcription start site region 160262	317 bp downstream
Tssr160263	transcription start site region 160263	332 bp downstream
Tssr160264	transcription start site region 160264	375 bp downstream
Tssr160265	transcription start site region 160265	417 bp downstream
Tssr160266	transcription start site region 160266	447 bp downstream
Tssr160267	transcription start site region 160267	503 bp downstream
Tssr160268	transcription start site region 160268	662 bp downstream
Tssr160269	transcription start site region 160269	708 bp downstream
Tssr160270	transcription start site region 160270	847 bp downstream
Tssr160271	transcription start site region 160271	897 bp downstream
Tssr160272	transcription start site region 160272	949 bp downstream
Tssr160273	transcription start site region 160273	976 bp downstream
Tssr160274	transcription start site region 160274	1006 bp downstream
Tssr160275	transcription start site region 160275	1078 bp downstream
Tssr160276	transcription start site region 160276	1169 bp downstream
Tssr160277	transcription start site region 160277	1198 bp downstream
Tssr160278	transcription start site region 160278	1253 bp downstream
Tssr160279	transcription start site region 160279	1273 bp downstream
Tssr160280	transcription start site region 160280	1376 bp downstream
Tssr160281	transcription start site region 160281	1659 bp downstream