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rs33254818 SNP Detail
Summary
  • ID
    rs33254818
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:3392 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TAGCCATAAT ATGATTTATC TCAACCCTAG CAGAAACAAA
CCGGGCCCCC TTCGACCTGA CAGAAGGAGA ATCAGAATTA GTATCAGGGT TTAACGTAGA
R
TACGCAGCCG GCCCATTCGC GTTATTCTTT ATAGCAGAGT ACACTAACAT TATTCTAATA
AACGCCCTAA CAACTATTAT CTTCCTAGGA CCCCTATACT                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790976 NES10981320 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33254818 SNP A A A A A A A A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790976 NES10981320 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3392 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1936 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 522 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 717 bp downstream
mt-Ta mitochondrially encoded tRNA alanine 1626 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1800 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 314 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 642 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 453 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1697 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 380 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1558 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1868 bp downstream
Tssr160110 transcription start site region 160110 1249 bp downstream
Tssr160111 transcription start site region 160111 1230 bp downstream
Tssr160112 transcription start site region 160112 1214 bp downstream
Tssr160113 transcription start site region 160113 1181 bp downstream
Tssr160114 transcription start site region 160114 1133 bp downstream
Tssr160115 transcription start site region 160115 1101 bp downstream
Tssr160116 transcription start site region 160116 1059 bp downstream
Tssr160117 transcription start site region 160117 1036 bp downstream
Tssr160118 transcription start site region 160118 1012 bp downstream
Tssr160119 transcription start site region 160119 990 bp downstream
Tssr160120 transcription start site region 160120 964 bp downstream
Tssr160121 transcription start site region 160121 631 bp downstream
Tssr160122 transcription start site region 160122 528 bp downstream
Tssr160123 transcription start site region 160123 333 bp downstream
Tssr160124 transcription start site region 160124 317 bp downstream
Tssr160125 transcription start site region 160125 270 bp downstream
Tssr160126 transcription start site region 160126 210 bp downstream
Tssr160127 transcription start site region 160127 2 bp downstream
Tssr160128 transcription start site region 160128 42 bp upstream
Tssr160129 transcription start site region 160129 514 bp upstream
Tssr160130 transcription start site region 160130 613 bp upstream
Tssr160131 transcription start site region 160131 836 bp upstream
Tssr160132 transcription start site region 160132 894 bp upstream
Tssr160133 transcription start site region 160133 1012 bp upstream
Tssr160134 transcription start site region 160134 1274 bp upstream
Tssr160135 transcription start site region 160135 1358 bp upstream
Tssr160136 transcription start site region 160136 1478 bp upstream
Tssr160137 transcription start site region 160137 1623 bp upstream
Tssr160138 transcription start site region 160138 1927 bp upstream
Tssr160139 transcription start site region 160139 1966 bp upstream
Tssr160236 transcription start site region 160236 1969 bp upstream
Tssr160237 transcription start site region 160237 1937 bp upstream
Tssr160238 transcription start site region 160238 1886 bp upstream
Tssr160239 transcription start site region 160239 1848 bp upstream
Tssr160240 transcription start site region 160240 1773 bp upstream
Tssr160241 transcription start site region 160241 1739 bp upstream
Tssr160242 transcription start site region 160242 1447 bp upstream
Tssr160243 transcription start site region 160243 1383 bp upstream
Tssr160244 transcription start site region 160244 1336 bp upstream
Tssr160245 transcription start site region 160245 1283 bp upstream
Tssr160246 transcription start site region 160246 1210 bp upstream
Tssr160247 transcription start site region 160247 1112 bp upstream
Tssr160248 transcription start site region 160248 1038 bp upstream
Tssr160249 transcription start site region 160249 1003 bp upstream
Tssr160250 transcription start site region 160250 964 bp upstream
Tssr160251 transcription start site region 160251 888 bp upstream
Tssr160252 transcription start site region 160252 537 bp upstream
Tssr160253 transcription start site region 160253 344 bp upstream
Tssr160254 transcription start site region 160254 266 bp upstream
Tssr160255 transcription start site region 160255 227 bp upstream
Tssr160256 transcription start site region 160256 110 bp upstream
Tssr160257 transcription start site region 160257 55 bp upstream
Tssr160258 transcription start site region 160258 1 bp upstream
Tssr160259 transcription start site region 160259 6 bp downstream
Tssr160260 transcription start site region 160260 42 bp downstream
Tssr160261 transcription start site region 160261 270 bp downstream
Tssr160262 transcription start site region 160262 305 bp downstream
Tssr160263 transcription start site region 160263 320 bp downstream
Tssr160264 transcription start site region 160264 363 bp downstream
Tssr160265 transcription start site region 160265 405 bp downstream
Tssr160266 transcription start site region 160266 435 bp downstream
Tssr160267 transcription start site region 160267 491 bp downstream
Tssr160268 transcription start site region 160268 650 bp downstream
Tssr160269 transcription start site region 160269 696 bp downstream
Tssr160270 transcription start site region 160270 835 bp downstream
Tssr160271 transcription start site region 160271 885 bp downstream
Tssr160272 transcription start site region 160272 937 bp downstream
Tssr160273 transcription start site region 160273 964 bp downstream
Tssr160274 transcription start site region 160274 994 bp downstream
Tssr160275 transcription start site region 160275 1066 bp downstream
Tssr160276 transcription start site region 160276 1157 bp downstream
Tssr160277 transcription start site region 160277 1186 bp downstream
Tssr160278 transcription start site region 160278 1241 bp downstream
Tssr160279 transcription start site region 160279 1261 bp downstream
Tssr160280 transcription start site region 160280 1364 bp downstream
Tssr160281 transcription start site region 160281 1647 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory