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rs33254821 SNP Detail
Summary
  • ID
    rs33254821
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:3443 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TCGACCTGAC AGAAGGAGAA TCAGAATTAG TATCAGGGTT
TAACGTAGAA TACGCAGCCG GCCCATTCGC GTTATTCTTT ATAGCAGAGT ACACTAACAT
Y
ATTCTAATAA ACGCCCTAAC AACTATTATC TTCCTAGGAC CCCTATACTA TATCAATTTA
CCAGAACTCT ACTCAACTAA CTTCATAATA GAAGCTCTAC                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790979 NES10981321 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33254821 SNP T T T T T T C T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790979 NES10981321 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3443 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1885 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 471 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 768 bp downstream
mt-Ta mitochondrially encoded tRNA alanine 1575 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1749 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 263 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 693 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 402 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1646 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 329 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1507 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1817 bp downstream
Tssr160110 transcription start site region 160110 1300 bp downstream
Tssr160111 transcription start site region 160111 1281 bp downstream
Tssr160112 transcription start site region 160112 1265 bp downstream
Tssr160113 transcription start site region 160113 1232 bp downstream
Tssr160114 transcription start site region 160114 1184 bp downstream
Tssr160115 transcription start site region 160115 1152 bp downstream
Tssr160116 transcription start site region 160116 1110 bp downstream
Tssr160117 transcription start site region 160117 1087 bp downstream
Tssr160118 transcription start site region 160118 1063 bp downstream
Tssr160119 transcription start site region 160119 1041 bp downstream
Tssr160120 transcription start site region 160120 1015 bp downstream
Tssr160121 transcription start site region 160121 682 bp downstream
Tssr160122 transcription start site region 160122 579 bp downstream
Tssr160123 transcription start site region 160123 384 bp downstream
Tssr160124 transcription start site region 160124 368 bp downstream
Tssr160125 transcription start site region 160125 321 bp downstream
Tssr160126 transcription start site region 160126 261 bp downstream
Tssr160127 transcription start site region 160127 53 bp downstream
Tssr160128 transcription start site region 160128 within coordinates
Tssr160129 transcription start site region 160129 463 bp upstream
Tssr160130 transcription start site region 160130 562 bp upstream
Tssr160131 transcription start site region 160131 785 bp upstream
Tssr160132 transcription start site region 160132 843 bp upstream
Tssr160133 transcription start site region 160133 961 bp upstream
Tssr160134 transcription start site region 160134 1223 bp upstream
Tssr160135 transcription start site region 160135 1307 bp upstream
Tssr160136 transcription start site region 160136 1427 bp upstream
Tssr160137 transcription start site region 160137 1572 bp upstream
Tssr160138 transcription start site region 160138 1876 bp upstream
Tssr160139 transcription start site region 160139 1915 bp upstream
Tssr160140 transcription start site region 160140 1957 bp upstream
Tssr160237 transcription start site region 160237 1988 bp upstream
Tssr160238 transcription start site region 160238 1937 bp upstream
Tssr160239 transcription start site region 160239 1899 bp upstream
Tssr160240 transcription start site region 160240 1824 bp upstream
Tssr160241 transcription start site region 160241 1790 bp upstream
Tssr160242 transcription start site region 160242 1498 bp upstream
Tssr160243 transcription start site region 160243 1434 bp upstream
Tssr160244 transcription start site region 160244 1387 bp upstream
Tssr160245 transcription start site region 160245 1334 bp upstream
Tssr160246 transcription start site region 160246 1261 bp upstream
Tssr160247 transcription start site region 160247 1163 bp upstream
Tssr160248 transcription start site region 160248 1089 bp upstream
Tssr160249 transcription start site region 160249 1054 bp upstream
Tssr160250 transcription start site region 160250 1015 bp upstream
Tssr160251 transcription start site region 160251 939 bp upstream
Tssr160252 transcription start site region 160252 588 bp upstream
Tssr160253 transcription start site region 160253 395 bp upstream
Tssr160254 transcription start site region 160254 317 bp upstream
Tssr160255 transcription start site region 160255 278 bp upstream
Tssr160256 transcription start site region 160256 161 bp upstream
Tssr160257 transcription start site region 160257 106 bp upstream
Tssr160258 transcription start site region 160258 52 bp upstream
Tssr160259 transcription start site region 160259 18 bp upstream
Tssr160260 transcription start site region 160260 within coordinates
Tssr160261 transcription start site region 160261 219 bp downstream
Tssr160262 transcription start site region 160262 254 bp downstream
Tssr160263 transcription start site region 160263 269 bp downstream
Tssr160264 transcription start site region 160264 312 bp downstream
Tssr160265 transcription start site region 160265 354 bp downstream
Tssr160266 transcription start site region 160266 384 bp downstream
Tssr160267 transcription start site region 160267 440 bp downstream
Tssr160268 transcription start site region 160268 599 bp downstream
Tssr160269 transcription start site region 160269 645 bp downstream
Tssr160270 transcription start site region 160270 784 bp downstream
Tssr160271 transcription start site region 160271 834 bp downstream
Tssr160272 transcription start site region 160272 886 bp downstream
Tssr160273 transcription start site region 160273 913 bp downstream
Tssr160274 transcription start site region 160274 943 bp downstream
Tssr160275 transcription start site region 160275 1015 bp downstream
Tssr160276 transcription start site region 160276 1106 bp downstream
Tssr160277 transcription start site region 160277 1135 bp downstream
Tssr160278 transcription start site region 160278 1190 bp downstream
Tssr160279 transcription start site region 160279 1210 bp downstream
Tssr160280 transcription start site region 160280 1313 bp downstream
Tssr160281 transcription start site region 160281 1596 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory