rs33255059 SNP Detail

Summary

• ID
  rs33255059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:35885444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG AGACAGGCAC TGTGCCTGAC
  R
  CAAGAAGTTT CATGAAATCA ACAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45757190	mCV22744177	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss148227243	ENSMUSSNP5575524	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss321510500	CHEV_5_36070749	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33255059					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35885444 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr609994	regulatory region 609994			456 bp distal
Rr609995	regulatory region 609995			436 bp proximal
Rr609996	regulatory region 609996			1166 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1			Intron
				Noncoding-Transcript-Variant
Tssr45957	transcription start site region 45957			308 bp upstream
Tssr50711	transcription start site region 50711			907 bp downstream
Tssr50712	transcription start site region 50712			922 bp downstream
Tssr50713	transcription start site region 50713			948 bp downstream
Tssr50714	transcription start site region 50714			988 bp downstream
Tssr50715	transcription start site region 50715			1160 bp downstream
Tssr50716	transcription start site region 50716			1190 bp downstream