rs33255227 SNP Detail

Summary

• ID
  rs33255227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrMT:1519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGCCTAA CGAGCTTGGT GATAGCTGGT TACCCAAAAA
  ATGAATTTAA GTTCAATTTT AAACTTGCTA AAAAAACAAC AAAATCAAAA AGTAAGTTTA
  R
  ATTATAGCCA AAAGAGGGAC AGCTCTTCTG GAACGGAAAA AACCTTTAAT AGTGAATAAT
  TAACAAAACA GCTTTTAACC ATTGTAGGCC TAAAAGCAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46790901	NES10981286	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33255227					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790901	NES10981286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:1519 () rs orientation: forward

Symbol	Name	Function Class
mt-Nd1	mitochondrially encoded NADH dehydrogenase 1	1232 bp upstream
mt-Rnr1	mitochondrially encoded 12S rRNA	495 bp downstream
mt-Rnr2	mitochondrially encoded 16S rRNA	within coordinates
mt-Rr998	mitochondrially encoded regulatory region 998	within coordinates
mt-Tf	mitochondrially encoded tRNA phenylalanine	1451 bp downstream
mt-Tl1	mitochondrially encoded tRNA leucine 1	1157 bp upstream
mt-Tv	mitochondrially encoded tRNA valine	426 bp downstream
Tssr160106	transcription start site region 160106	1440 bp downstream
Tssr160107	transcription start site region 160107	1021 bp downstream
Tssr160108	transcription start site region 160108	916 bp downstream
Tssr160109	transcription start site region 160109	413 bp downstream
Tssr160110	transcription start site region 160110	613 bp upstream
Tssr160111	transcription start site region 160111	632 bp upstream
Tssr160112	transcription start site region 160112	647 bp upstream
Tssr160113	transcription start site region 160113	681 bp upstream
Tssr160114	transcription start site region 160114	731 bp upstream
Tssr160115	transcription start site region 160115	761 bp upstream
Tssr160116	transcription start site region 160116	803 bp upstream
Tssr160117	transcription start site region 160117	826 bp upstream
Tssr160118	transcription start site region 160118	850 bp upstream
Tssr160119	transcription start site region 160119	872 bp upstream
Tssr160120	transcription start site region 160120	900 bp upstream
Tssr160121	transcription start site region 160121	1224 bp upstream
Tssr160122	transcription start site region 160122	1334 bp upstream
Tssr160123	transcription start site region 160123	1529 bp upstream
Tssr160124	transcription start site region 160124	1545 bp upstream
Tssr160125	transcription start site region 160125	1594 bp upstream
Tssr160126	transcription start site region 160126	1652 bp upstream
Tssr160127	transcription start site region 160127	1856 bp upstream
Tssr160128	transcription start site region 160128	1915 bp upstream
Tssr160216	transcription start site region 160216	1206 bp upstream
Tssr160217	transcription start site region 160217	1152 bp upstream
Tssr160218	transcription start site region 160218	1125 bp upstream
Tssr160219	transcription start site region 160219	1109 bp upstream
Tssr160220	transcription start site region 160220	1073 bp upstream
Tssr160221	transcription start site region 160221	1034 bp upstream
Tssr160222	transcription start site region 160222	986 bp upstream
Tssr160223	transcription start site region 160223	938 bp upstream
Tssr160224	transcription start site region 160224	878 bp upstream
Tssr160225	transcription start site region 160225	831 bp upstream
Tssr160226	transcription start site region 160226	778 bp upstream
Tssr160227	transcription start site region 160227	767 bp upstream
Tssr160228	transcription start site region 160228	731 bp upstream
Tssr160229	transcription start site region 160229	673 bp upstream
Tssr160230	transcription start site region 160230	665 bp upstream
Tssr160231	transcription start site region 160231	635 bp upstream
Tssr160232	transcription start site region 160232	276 bp upstream
Tssr160233	transcription start site region 160233	253 bp upstream
Tssr160234	transcription start site region 160234	220 bp upstream
Tssr160235	transcription start site region 160235	171 bp upstream
Tssr160236	transcription start site region 160236	96 bp upstream
Tssr160237	transcription start site region 160237	64 bp upstream
Tssr160238	transcription start site region 160238	13 bp upstream
Tssr160239	transcription start site region 160239	2 bp downstream
Tssr160240	transcription start site region 160240	69 bp downstream
Tssr160241	transcription start site region 160241	123 bp downstream
Tssr160242	transcription start site region 160242	359 bp downstream
Tssr160243	transcription start site region 160243	446 bp downstream
Tssr160244	transcription start site region 160244	505 bp downstream
Tssr160245	transcription start site region 160245	548 bp downstream
Tssr160246	transcription start site region 160246	648 bp downstream
Tssr160247	transcription start site region 160247	739 bp downstream
Tssr160248	transcription start site region 160248	820 bp downstream
Tssr160249	transcription start site region 160249	841 bp downstream
Tssr160250	transcription start site region 160250	900 bp downstream
Tssr160251	transcription start site region 160251	947 bp downstream
Tssr160252	transcription start site region 160252	1325 bp downstream
Tssr160253	transcription start site region 160253	1502 bp downstream
Tssr160254	transcription start site region 160254	1592 bp downstream
Tssr160255	transcription start site region 160255	1634 bp downstream
Tssr160256	transcription start site region 160256	1721 bp downstream
Tssr160257	transcription start site region 160257	1788 bp downstream
Tssr160258	transcription start site region 160258	1862 bp downstream
Tssr160259	transcription start site region 160259	1879 bp downstream
Tssr160260	transcription start site region 160260	1915 bp downstream