rs33255460 SNP Detail

Summary

• ID
  rs33255460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107890800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGCCTG AGCTTCCACA
  TGCTGTCAGG CCCTTTTAAT GATGGACACC AGGCTGGATC ACCATTCTCT GACCTTGGTC
  TTTTTATATC TGAACCACAC GCGAGGAGGA GTCTTTTCAG ACTTCTTAGG AAAAAGGAAA
  TCAAATCTCA TCACAGGTGA GTAGGGCCCA CAATCCCCAC AGCCTGCTGA CTGGAAAACC
  Y
  GGGATTCACA TTCAGACCGG GCCCGATCTG GCTCACTTCG CGTCGTTACT CACAGCTGGC
  GACCCCTGTC ACAAAAGAAG TGTTGACTCT CACTGGCCCT AAAAGGGGCT CGGACCAGGC
  AATGCATAAT CTTCCCACCT GCCCCTGTCA ACACCAGAGA GCCGGACAAT CAGAGAAGCC
  AAGTAGTCAG GTTCAAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47276355	NES11395009	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C	T	T	T	C		C		C	T	C		T
ss138671157	ENSMUSSNP182483	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T					C
ss324151809	CHEV_12_109162751	CHEVERUD	SCREENING_POP	f	SNP												C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33255460					SNP	T	T	T	C	T	T	C	T	T	T	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276355	NES11395009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107890800 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
MCA1	DNA segment, MCA1, multiple CA repeat 1	746 bp distal
Rr369605	regulatory region 369605	1632 bp upstream