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rs33255684 SNP Detail
Summary
  • ID
    rs33255684
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:3467 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AATTAGTATC AGGGTTTAAC GTAGAATACG CAGCCGGCCC
ATTCGCGTTA TTCTTTATAG CAGAGTACAC TAACATTATT CTAATAAACG CCCTAACAAC
Y
ATTATCTTCC TAGGACCCCT ATACTATATC AATTTACCAG AACTCTACTC AACTAACTTC
ATAATAGAAG CTCTACTACT ATCATCAACA TTCCTATGGA                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790982 NES10981322 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33255684 SNP T T T T T T C T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790982 NES10981322 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3467 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1861 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 447 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 792 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1551 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1725 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 239 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 717 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 378 bp upstream
mt-Tn mitochondrially encoded tRNA asparagine 1622 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 305 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1483 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1793 bp downstream
Tssr160110 transcription start site region 160110 1324 bp downstream
Tssr160111 transcription start site region 160111 1305 bp downstream
Tssr160112 transcription start site region 160112 1289 bp downstream
Tssr160113 transcription start site region 160113 1256 bp downstream
Tssr160114 transcription start site region 160114 1208 bp downstream
Tssr160115 transcription start site region 160115 1176 bp downstream
Tssr160116 transcription start site region 160116 1134 bp downstream
Tssr160117 transcription start site region 160117 1111 bp downstream
Tssr160118 transcription start site region 160118 1087 bp downstream
Tssr160119 transcription start site region 160119 1065 bp downstream
Tssr160120 transcription start site region 160120 1039 bp downstream
Tssr160121 transcription start site region 160121 706 bp downstream
Tssr160122 transcription start site region 160122 603 bp downstream
Tssr160123 transcription start site region 160123 408 bp downstream
Tssr160124 transcription start site region 160124 392 bp downstream
Tssr160125 transcription start site region 160125 345 bp downstream
Tssr160126 transcription start site region 160126 285 bp downstream
Tssr160127 transcription start site region 160127 77 bp downstream
Tssr160128 transcription start site region 160128 22 bp downstream
Tssr160129 transcription start site region 160129 439 bp upstream
Tssr160130 transcription start site region 160130 538 bp upstream
Tssr160131 transcription start site region 160131 761 bp upstream
Tssr160132 transcription start site region 160132 819 bp upstream
Tssr160133 transcription start site region 160133 937 bp upstream
Tssr160134 transcription start site region 160134 1199 bp upstream
Tssr160135 transcription start site region 160135 1283 bp upstream
Tssr160136 transcription start site region 160136 1403 bp upstream
Tssr160137 transcription start site region 160137 1548 bp upstream
Tssr160138 transcription start site region 160138 1852 bp upstream
Tssr160139 transcription start site region 160139 1891 bp upstream
Tssr160140 transcription start site region 160140 1933 bp upstream
Tssr160238 transcription start site region 160238 1961 bp upstream
Tssr160239 transcription start site region 160239 1923 bp upstream
Tssr160240 transcription start site region 160240 1848 bp upstream
Tssr160241 transcription start site region 160241 1814 bp upstream
Tssr160242 transcription start site region 160242 1522 bp upstream
Tssr160243 transcription start site region 160243 1458 bp upstream
Tssr160244 transcription start site region 160244 1411 bp upstream
Tssr160245 transcription start site region 160245 1358 bp upstream
Tssr160246 transcription start site region 160246 1285 bp upstream
Tssr160247 transcription start site region 160247 1187 bp upstream
Tssr160248 transcription start site region 160248 1113 bp upstream
Tssr160249 transcription start site region 160249 1078 bp upstream
Tssr160250 transcription start site region 160250 1039 bp upstream
Tssr160251 transcription start site region 160251 963 bp upstream
Tssr160252 transcription start site region 160252 612 bp upstream
Tssr160253 transcription start site region 160253 419 bp upstream
Tssr160254 transcription start site region 160254 341 bp upstream
Tssr160255 transcription start site region 160255 302 bp upstream
Tssr160256 transcription start site region 160256 185 bp upstream
Tssr160257 transcription start site region 160257 130 bp upstream
Tssr160258 transcription start site region 160258 76 bp upstream
Tssr160259 transcription start site region 160259 42 bp upstream
Tssr160260 transcription start site region 160260 within coordinates
Tssr160261 transcription start site region 160261 195 bp downstream
Tssr160262 transcription start site region 160262 230 bp downstream
Tssr160263 transcription start site region 160263 245 bp downstream
Tssr160264 transcription start site region 160264 288 bp downstream
Tssr160265 transcription start site region 160265 330 bp downstream
Tssr160266 transcription start site region 160266 360 bp downstream
Tssr160267 transcription start site region 160267 416 bp downstream
Tssr160268 transcription start site region 160268 575 bp downstream
Tssr160269 transcription start site region 160269 621 bp downstream
Tssr160270 transcription start site region 160270 760 bp downstream
Tssr160271 transcription start site region 160271 810 bp downstream
Tssr160272 transcription start site region 160272 862 bp downstream
Tssr160273 transcription start site region 160273 889 bp downstream
Tssr160274 transcription start site region 160274 919 bp downstream
Tssr160275 transcription start site region 160275 991 bp downstream
Tssr160276 transcription start site region 160276 1082 bp downstream
Tssr160277 transcription start site region 160277 1111 bp downstream
Tssr160278 transcription start site region 160278 1166 bp downstream
Tssr160279 transcription start site region 160279 1186 bp downstream
Tssr160280 transcription start site region 160280 1289 bp downstream
Tssr160281 transcription start site region 160281 1572 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory