rs33255952 SNP Detail

Summary

• ID
  rs33255952
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89585204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGATTAT TTTTATTTAG
  ATGAAGCAAG ATCAAGTCTC ACCATTTCTT TCTATTTAAT CTCTTTTTAG ATGGCAGTGA
  ATATCAATAA TGTTAAGGGA AAAACACTCT AAATTTGATG TTTTACTTGT TATCAAATAG
  TTATTCTCCA AAAGTTGATA AACATTTACT TTTTATTTTT CATTTGTGAT TTCAAATATA
  M
  TATGGGTCAT AACATAATGC ATATGGCCAT GATATTTGTG TGTGTGTGTA TTATGTGTAT
  GGGACATTTT ATTTTATAAA ACATTTTTGT TGGCCTTCTA GGATTCTCTC TCTCTCTCTC
  TCTTTCTCTC TCTGTCTTTC TTCCTTTCTT CCTTCCTTTC TTTCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss45757206	mCV22861607	ABI	CRAMUS_MOUSE	f	SNP		C	A			A
ss61194598	NES16707715	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A			A		A	C
ss148801882	ENSMUSSNP3923085	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A				A
ss321604690	CHEV_5_89866370	CHEVERUD	SCREENING_POP	f	SNP									A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs33255952					SNP	C	C	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194598	NES16707715	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89585204 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr51706	transcription start site region 51706	1757 bp upstream
Tssr51707	transcription start site region 51707	1697 bp upstream
Tssr51708	transcription start site region 51708	920 bp downstream
Tssr51709	transcription start site region 51709	1097 bp downstream