rs33256550 SNP Detail

Summary

• ID
  rs33256550
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27748879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATCTTTAAC TCCTCAACTT ATCCAAGTGC CTTAGGGGTA ATAGAACACT GTCTTAGTCA
  GTGTTCTATT GCTGTGACGA GATACCATGA CCACTGCAAC TCTTATAAAA GAGCACATTC
  AATTGAGGTT TCTTGCTGTT TCAGAGGTTT AGTCCATTGT CATCATGGCA GGGAGCATGG
  TGGCACACAG GCAGACATGG TGCTGGAGAT GTAGATGAGA GTTTCTTATT TGGGTCTGTA
  GGCAGCTGTA AGAGAGAGCC ACTGGGCTTG GCTTGGCCAA TTTTTTTTTG TTTTTTTTTT
  K
  TTTTTGTTTT TGTTTTTTTG TTTTTGTTTT TTTGAGACAG GGTTTCTCTG TGTAGCTCTG
  GCAGTCCTGG AACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CTGCCTGCCT
  CTGCCTCCCG AGTGCTGATC CCCCAACCTT CCCTTCCCGA GTTCTAGGAT TATAAGCTTA
  CAAAGTGCCA CCACGTTCAG TTTTTATGTT GATGCTTCGG ATTTAACCGT GGACTTAGTG
  TATACGTGGT AAACTGTCTA CCAAGTGAGC TGTGTTCCAA GCTTCCCCTT CCCCGTGTTT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46253933	mCV24519103	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33256550					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27748879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	1087 bp proximal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	1476 bp upstream
Rr176179	regulatory region 176179	1879 bp distal
Rr186444	regulatory region 186444	521 bp proximal
Tssr76776	transcription start site region 76776	1470 bp upstream
Tssr76777	transcription start site region 76777	1481 bp upstream
Tssr76778	transcription start site region 76778	1544 bp upstream
Tssr76779	transcription start site region 76779	1578 bp upstream
Tssr76780	transcription start site region 76780	1646 bp upstream