rs33257218 SNP Detail

Summary

• ID
  rs33257218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:107891764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCAGCT TTGCATTCCA
  GAGCCTTGGG TGGAGGGCTG GCCCTGCCCA CCCACTCTGC CTCCCGAACT AAACTAAATG
  CTGAACATTA AGAATCGGTC TGTTCCCAGG AGTTCTGTCT CCAAGGTCAC ACCATGTCTG
  GGAAGGAAAA CTGTTCCTTC ACGCAAATGC TCGCAGCAAC TTCCCAGTAC CCTTTATCCT
  Y
  GTGTGGCCAC CTGCCTCGCT CTCTACACTG CAGAGACTGA TGAAGCACTG TGAGCCAGGG
  CCATGGAGCA GGAGAAGGGC TGCTTTCACG GAACCACAGT CAGCAAGACA TCGGTGATTA
  CGTGATTTCC AGCGAGGGTT CAAGTATCGA GTCCATAAGA AAGGTGAGTC CTAGCAACTT
  GGGAGCCCTA GGGAAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47276373	NES11395019	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	T	T	C		C	T		T
ss324151818	CHEV_12_109163715	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33257218					SNP	T	T	C	T	T	C	T	T	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276373	NES11395019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107891764 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	Intron
MCA1	DNA segment, MCA1, multiple CA repeat 1	1710 bp distal
Rr369605	regulatory region 369605	668 bp upstream
Rr472387	regulatory region 472387	1992 bp proximal