rs33257523 SNP Detail

Summary

• ID
  rs33257523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150881603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGGGTG CGCGTGCACG
  AGAGGTGGAT GAGTGTTATC AAGGCTTACT GCTGTGTGTG GGTGGATGGT CCTCTCCGTT
  AATGGCTTGG TGGGCTTGCT TAGGGCTGAG AAGGACATCC GAGCCGTACT GGAGAAACTC
  TCCAGACCCT TGGCTGGCCT GTCTTTCTAT GGTGACCGCA CAGTCTCCAT CAGGAGATGG
  R
  GCAGGAGAGT GTGCCCACCA ACCTCGGAAC CTAGCTGCCC GGTGACTTTA GCGCTTCACT
  TCTTGCCCAC AGCCTTGTAG GAACTAGAGC CTTCATCTGA ACATCCTTTG AAAGATGCTT
  AGAAGAACTG AAGAGAAATG GGAGTCTCTG CAGTGTCTGC CGAATGGTTG TTCTTAAAAA
  TGTGTATTTG TGTTTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45256628	mCV22554894	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147953169	ENSMUSSNP3080396	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33257523					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150881603 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	within coordinates
Cpgi12417	CpG island 12417	within coordinates
Nanp	N-acetylneuraminic acid phosphatase	304 bp upstream
Rr397387	regulatory region 397387	67 bp downstream
Tssr20713	transcription start site region 20713	166 bp downstream
Tssr26734	transcription start site region 26734	280 bp upstream