rs33258053 SNP Detail

Summary

• ID
  rs33258053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107892078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTACGT GATTTCCAGC
  GAGGGTTCAA GTATCGAGTC CATAAGAAAG GTGAGTCCTA GCAACTTGGG AGCCCTAGGG
  AAGGCCCTCT GAGAACACCC TAATGCTGAC TTTAGGAAGG AAAGCAAGGA CAGGCTGGTA
  GAAGAAAGGA GTCCAACGCA TGGAGATGGG ACCCTCAATG CAGAGGGGAA ACCCTGGAGG
  Y
  GGAACTTGAA AACAGGTTTG GAGCCTGTCT GGGGAAGGAC AGAAAATGTG TGTTAAAGAA
  AATAACTTAG CTGAATATAA AACAAATTCC AATTTCTACA AAAATAAAGA AAGAAAAAGA
  AAAAGAAAAA GAATTTCAAG CCCATTCAAG ACAAGAACTG ATTTGTCTAG CAAAAATCTC
  ACTACAGCAA AGGATGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47276388	NES11395026	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C	C	T		T	T	C	C		C
ss324151823	CHEV_12_109164029	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33258053					SNP	C	C	T	C	C	T	C	C	C	T	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276388	NES11395026	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107892078 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr369605	regulatory region 369605	354 bp upstream
Rr472387	regulatory region 472387	1678 bp proximal