About   Help   FAQ
rs33258237 SNP Detail
Summary
  • ID
    rs33258237
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:4012 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TAATAAATCC TATCACCCTT GCCATCATCT ACTTCACAAT
CTTCTTAGGT CCTGTAATCA CAATATCCAG CACCAACCTA ATACTAATAT GAGTAGGCCT
R
GAATTCAGCC TACTAGCAAT TATCCCCATA CTAATCAACA AAAAAAACCC ACGATCAACT
GAAGCAGCAA CAAAATACTT CGTCACACAA GCAACAGCCT                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46791015 NES10981346 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33258237 SNP G G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46791015 NES10981346 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:4012 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1316 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 305 bp downstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 within coordinates
mt-Rnr2 mitochondrially encoded 16S rRNA 1337 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1006 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1180 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 238 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1262 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 99 bp downstream
mt-Tn mitochondrially encoded tRNA asparagine 1077 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 170 bp upstream
mt-Tw mitochondrially encoded tRNA tryptophan 938 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1248 bp downstream
Tssr160110 transcription start site region 160110 1869 bp downstream
Tssr160111 transcription start site region 160111 1850 bp downstream
Tssr160112 transcription start site region 160112 1834 bp downstream
Tssr160113 transcription start site region 160113 1801 bp downstream
Tssr160114 transcription start site region 160114 1753 bp downstream
Tssr160115 transcription start site region 160115 1721 bp downstream
Tssr160116 transcription start site region 160116 1679 bp downstream
Tssr160117 transcription start site region 160117 1656 bp downstream
Tssr160118 transcription start site region 160118 1632 bp downstream
Tssr160119 transcription start site region 160119 1610 bp downstream
Tssr160120 transcription start site region 160120 1584 bp downstream
Tssr160121 transcription start site region 160121 1251 bp downstream
Tssr160122 transcription start site region 160122 1148 bp downstream
Tssr160123 transcription start site region 160123 953 bp downstream
Tssr160124 transcription start site region 160124 937 bp downstream
Tssr160125 transcription start site region 160125 890 bp downstream
Tssr160126 transcription start site region 160126 830 bp downstream
Tssr160127 transcription start site region 160127 622 bp downstream
Tssr160128 transcription start site region 160128 567 bp downstream
Tssr160129 transcription start site region 160129 86 bp downstream
Tssr160130 transcription start site region 160130 within coordinates
Tssr160131 transcription start site region 160131 216 bp upstream
Tssr160132 transcription start site region 160132 274 bp upstream
Tssr160133 transcription start site region 160133 392 bp upstream
Tssr160134 transcription start site region 160134 654 bp upstream
Tssr160135 transcription start site region 160135 738 bp upstream
Tssr160136 transcription start site region 160136 858 bp upstream
Tssr160137 transcription start site region 160137 1003 bp upstream
Tssr160138 transcription start site region 160138 1307 bp upstream
Tssr160139 transcription start site region 160139 1346 bp upstream
Tssr160140 transcription start site region 160140 1388 bp upstream
Tssr160141 transcription start site region 160141 1710 bp upstream
Tssr160142 transcription start site region 160142 1744 bp upstream
Tssr160143 transcription start site region 160143 1791 bp upstream
Tssr160144 transcription start site region 160144 1805 bp upstream
Tssr160145 transcription start site region 160145 1823 bp upstream
Tssr160146 transcription start site region 160146 1881 bp upstream
Tssr160147 transcription start site region 160147 1983 bp upstream
Tssr160244 transcription start site region 160244 1956 bp upstream
Tssr160245 transcription start site region 160245 1903 bp upstream
Tssr160246 transcription start site region 160246 1830 bp upstream
Tssr160247 transcription start site region 160247 1732 bp upstream
Tssr160248 transcription start site region 160248 1658 bp upstream
Tssr160249 transcription start site region 160249 1623 bp upstream
Tssr160250 transcription start site region 160250 1584 bp upstream
Tssr160251 transcription start site region 160251 1508 bp upstream
Tssr160252 transcription start site region 160252 1157 bp upstream
Tssr160253 transcription start site region 160253 964 bp upstream
Tssr160254 transcription start site region 160254 886 bp upstream
Tssr160255 transcription start site region 160255 847 bp upstream
Tssr160256 transcription start site region 160256 730 bp upstream
Tssr160257 transcription start site region 160257 675 bp upstream
Tssr160258 transcription start site region 160258 621 bp upstream
Tssr160259 transcription start site region 160259 587 bp upstream
Tssr160260 transcription start site region 160260 359 bp upstream
Tssr160261 transcription start site region 160261 327 bp upstream
Tssr160262 transcription start site region 160262 303 bp upstream
Tssr160263 transcription start site region 160263 276 bp upstream
Tssr160264 transcription start site region 160264 236 bp upstream
Tssr160265 transcription start site region 160265 201 bp upstream
Tssr160266 transcription start site region 160266 139 bp upstream
Tssr160267 transcription start site region 160267 117 bp upstream
Tssr160268 transcription start site region 160268 30 bp downstream
Tssr160269 transcription start site region 160269 76 bp downstream
Tssr160270 transcription start site region 160270 215 bp downstream
Tssr160271 transcription start site region 160271 265 bp downstream
Tssr160272 transcription start site region 160272 317 bp downstream
Tssr160273 transcription start site region 160273 344 bp downstream
Tssr160274 transcription start site region 160274 374 bp downstream
Tssr160275 transcription start site region 160275 446 bp downstream
Tssr160276 transcription start site region 160276 537 bp downstream
Tssr160277 transcription start site region 160277 566 bp downstream
Tssr160278 transcription start site region 160278 621 bp downstream
Tssr160279 transcription start site region 160279 641 bp downstream
Tssr160280 transcription start site region 160280 744 bp downstream
Tssr160281 transcription start site region 160281 1027 bp downstream
Tssr160282 transcription start site region 160282 1783 bp downstream
Tssr160283 transcription start site region 160283 1846 bp downstream
Tssr160284 transcription start site region 160284 1916 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory