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rs33258240 SNP Detail
Summary
  • ID
    rs33258240
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:4048 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CAATCTTCTT AGGTCCTGTA ATCACAATAT CCAGCACCAA
CCTAATACTA ATATGAGTAG GCCTGGAATT CAGCCTACTA GCAATTATCC CCATACTAAT
Y
AACAAAAAAA ACCCACGATC AACTGAAGCA GCAACAAAAT ACTTCGTCAC ACAAGCAACA
GCCTCAATAA TTATCCTCCT GGCCATCGTA CTCAACTATA                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46791018 NES10981348 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33258240 SNP C C C C C C T C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46791018 NES10981348 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:4048 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1280 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 341 bp downstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 within coordinates
mt-Rnr2 mitochondrially encoded 16S rRNA 1373 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 970 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1144 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 274 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1298 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 135 bp downstream
mt-Tn mitochondrially encoded tRNA asparagine 1041 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 206 bp upstream
mt-Tw mitochondrially encoded tRNA tryptophan 902 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1212 bp downstream
Tssr160110 transcription start site region 160110 1905 bp downstream
Tssr160111 transcription start site region 160111 1886 bp downstream
Tssr160112 transcription start site region 160112 1870 bp downstream
Tssr160113 transcription start site region 160113 1837 bp downstream
Tssr160114 transcription start site region 160114 1789 bp downstream
Tssr160115 transcription start site region 160115 1757 bp downstream
Tssr160116 transcription start site region 160116 1715 bp downstream
Tssr160117 transcription start site region 160117 1692 bp downstream
Tssr160118 transcription start site region 160118 1668 bp downstream
Tssr160119 transcription start site region 160119 1646 bp downstream
Tssr160120 transcription start site region 160120 1620 bp downstream
Tssr160121 transcription start site region 160121 1287 bp downstream
Tssr160122 transcription start site region 160122 1184 bp downstream
Tssr160123 transcription start site region 160123 989 bp downstream
Tssr160124 transcription start site region 160124 973 bp downstream
Tssr160125 transcription start site region 160125 926 bp downstream
Tssr160126 transcription start site region 160126 866 bp downstream
Tssr160127 transcription start site region 160127 658 bp downstream
Tssr160128 transcription start site region 160128 603 bp downstream
Tssr160129 transcription start site region 160129 122 bp downstream
Tssr160130 transcription start site region 160130 34 bp downstream
Tssr160131 transcription start site region 160131 180 bp upstream
Tssr160132 transcription start site region 160132 238 bp upstream
Tssr160133 transcription start site region 160133 356 bp upstream
Tssr160134 transcription start site region 160134 618 bp upstream
Tssr160135 transcription start site region 160135 702 bp upstream
Tssr160136 transcription start site region 160136 822 bp upstream
Tssr160137 transcription start site region 160137 967 bp upstream
Tssr160138 transcription start site region 160138 1271 bp upstream
Tssr160139 transcription start site region 160139 1310 bp upstream
Tssr160140 transcription start site region 160140 1352 bp upstream
Tssr160141 transcription start site region 160141 1674 bp upstream
Tssr160142 transcription start site region 160142 1708 bp upstream
Tssr160143 transcription start site region 160143 1755 bp upstream
Tssr160144 transcription start site region 160144 1769 bp upstream
Tssr160145 transcription start site region 160145 1787 bp upstream
Tssr160146 transcription start site region 160146 1845 bp upstream
Tssr160147 transcription start site region 160147 1947 bp upstream
Tssr160148 transcription start site region 160148 1989 bp upstream
Tssr160244 transcription start site region 160244 1992 bp upstream
Tssr160245 transcription start site region 160245 1939 bp upstream
Tssr160246 transcription start site region 160246 1866 bp upstream
Tssr160247 transcription start site region 160247 1768 bp upstream
Tssr160248 transcription start site region 160248 1694 bp upstream
Tssr160249 transcription start site region 160249 1659 bp upstream
Tssr160250 transcription start site region 160250 1620 bp upstream
Tssr160251 transcription start site region 160251 1544 bp upstream
Tssr160252 transcription start site region 160252 1193 bp upstream
Tssr160253 transcription start site region 160253 1000 bp upstream
Tssr160254 transcription start site region 160254 922 bp upstream
Tssr160255 transcription start site region 160255 883 bp upstream
Tssr160256 transcription start site region 160256 766 bp upstream
Tssr160257 transcription start site region 160257 711 bp upstream
Tssr160258 transcription start site region 160258 657 bp upstream
Tssr160259 transcription start site region 160259 623 bp upstream
Tssr160260 transcription start site region 160260 395 bp upstream
Tssr160261 transcription start site region 160261 363 bp upstream
Tssr160262 transcription start site region 160262 339 bp upstream
Tssr160263 transcription start site region 160263 312 bp upstream
Tssr160264 transcription start site region 160264 272 bp upstream
Tssr160265 transcription start site region 160265 237 bp upstream
Tssr160266 transcription start site region 160266 175 bp upstream
Tssr160267 transcription start site region 160267 153 bp upstream
Tssr160268 transcription start site region 160268 within coordinates
Tssr160269 transcription start site region 160269 40 bp downstream
Tssr160270 transcription start site region 160270 179 bp downstream
Tssr160271 transcription start site region 160271 229 bp downstream
Tssr160272 transcription start site region 160272 281 bp downstream
Tssr160273 transcription start site region 160273 308 bp downstream
Tssr160274 transcription start site region 160274 338 bp downstream
Tssr160275 transcription start site region 160275 410 bp downstream
Tssr160276 transcription start site region 160276 501 bp downstream
Tssr160277 transcription start site region 160277 530 bp downstream
Tssr160278 transcription start site region 160278 585 bp downstream
Tssr160279 transcription start site region 160279 605 bp downstream
Tssr160280 transcription start site region 160280 708 bp downstream
Tssr160281 transcription start site region 160281 991 bp downstream
Tssr160282 transcription start site region 160282 1747 bp downstream
Tssr160283 transcription start site region 160283 1810 bp downstream
Tssr160284 transcription start site region 160284 1880 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory