rs33258337 SNP Detail

Summary

• ID
  rs33258337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25650831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG TGTTTGGATT GGAGTGAAAA
  R
  AAACATGGGC TTTATTACTT TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39514133	mCV22732058	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss145388692	ENSMUSSNP5481059	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss325337868	CHEV_17_25568802	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33258337					SNP	G	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25650831 () rs orientation: forward

Symbol	Name	Function Class
Cacna1h	calcium channel, voltage-dependent, T type, alpha 1H subunit	within coordinates
Cpgi8763	CpG island 8763	604 bp proximal
Gm65272	predicted gene, 65272	1837 bp upstream
Tssr146839	transcription start site region 146839	1406 bp downstream
Tssr146840	transcription start site region 146840	1697 bp downstream
Tssr146841	transcription start site region 146841	1754 bp downstream
Tssr146842	transcription start site region 146842	1885 bp downstream
Tssr146843	transcription start site region 146843	1918 bp downstream