rs33258669 SNP Detail

Summary

• ID
  rs33258669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24600882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTGACAA ACATGAACCA TAGATTCAAT TCCTAGTACC
  CTGGGTGGGA AAAAAAACTG ATCCATTCTT GGTAAAATTA AAAAAGCAAA AACAAAAACA
  R
  AAAAACGTAC CCCACATTGA TCCAGAGAGA ATAATGAGTT GAAAGCATAG AAGAGACCAA
  AGTCTAATTT TTCTCTTTTT CTCCTAGTAA TTTATTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45756183	mCV25442792	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss148093036	ENSMUSSNP6723142	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321495667	CHEV_5_23901702	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33258669					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24600882 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	1128 bp distal
Rr112284	regulatory region 112284	319 bp proximal
Rr112285	regulatory region 112285	1519 bp proximal
Rr124925	regulatory region 124925	481 bp distal
Rr398999	regulatory region 398999	1414 bp downstream
Tssr45412	transcription start site region 45412	1454 bp downstream