AAATA AACAATTTTT TTAAGTGTGA R CCATTCTCTA TAATGTAACA AAACC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss39514247 | mCV25199156 | ABI | CRAMUS_MOUSE | f | SNP | G | A | G | ||
ss145670880 | ENSMUSSNP3679233 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | |||
ss325395824 | CHEV_17_43747539 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs33259629 | SNP | G | A | G | G | A |
Location: Chr17:43921481 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Pla2g7 | phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) | within coordinates | ||||||
Rr527133 | regulatory region 527133 | 976 bp proximal | ||||||
Rr527134 | regulatory region 527134 | 1189 bp proximal | ||||||
Tssr144713 | transcription start site region 144713 | 674 bp upstream | ||||||
Tssr144714 | transcription start site region 144714 | 751 bp upstream | ||||||
Tssr144715 | transcription start site region 144715 | 1287 bp upstream | ||||||
Tssr148139 | transcription start site region 148139 | 1437 bp downstream | ||||||
Tssr148140 | transcription start site region 148140 | 1495 bp downstream | ||||||
Tssr148141 | transcription start site region 148141 | 1543 bp downstream | ||||||
Tssr148142 | transcription start site region 148142 | 1592 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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