rs33259815 SNP Detail

Summary

• ID
  rs33259815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107892771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCGTTCA ATTTTGTGGT
  CAGACCAGGT GTGCAAGGTC AGGCTGGGAG AAACAGCCAC CCAGCCCCGA AACAAAGAGA
  AATTGCTGAC CGAGGGGCTG ATCCGAGGAG GGTGAGAACA GAGGGGTTTG TCACAGAGAG
  TGGGGGAGGA CAGGGCAAAG GGCACAGGTG ATCTTACAAA TGACGACGGT TCCCCCGGAG
  Y
  GTCTACAACT ACAGTTGGTC ACCCTCAGAA CCCTGGCCTC CCACGAAACC TTCACATTCA
  TGGAAGATCA CCTAAGGTTT CTACATAGTC AGACCCCGGG CAACCTGCGT GTCGCAGGCC
  TCTCTGAACC ACATGTCTCC AGTGGGCTTT TCTTCATGCG TGTGGGGGTA TGCACACACG
  TTCTTGTATA AGCAGGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47276412	NES11395034	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	T	C		C	C	T	C		T
ss138671190	ENSMUSSNP5443615	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss324151834	CHEV_12_109164722	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33259815					SNP	T	T	T	T	T	C	T	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276412	NES11395034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107892771 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr369605	regulatory region 369605	64 bp downstream
Rr369606	regulatory region 369606	1537 bp upstream
Rr472387	regulatory region 472387	985 bp proximal