rs33260252 SNP Detail

Summary

• ID
  rs33260252
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107903348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TTTTCTGTTT CTCAAAGGAC
  K
  AGTGTGTCTT GACGTGCAAA AGCTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47276556	NES11394633	PERLEGEN	MM_PANEL2	f	SNP		T	G	T	T	G	G	G	G	T		G	G	G	G		T
ss138671229	ENSMUSSNP2666007	ENSEMBL	ENSEMBL_Sanger	f	SNP	T							G
ss324151900	CHEV_12_109175299	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33260252					SNP	T	T	G	T	T	G	G	G	G	T	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276556	NES11394633	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107903348 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	within coordinates
Rr472389	regulatory region 472389	1441 bp distal
Tssr117636	transcription start site region 117636	1557 bp downstream
Tssr117637	transcription start site region 117637	1583 bp downstream
Tssr117638	transcription start site region 117638	1648 bp downstream
Tssr117639	transcription start site region 117639	1663 bp downstream
Tssr117640	transcription start site region 117640	1684 bp downstream
Tssr117641	transcription start site region 117641	1704 bp downstream
Tssr117642	transcription start site region 117642	1741 bp downstream
Tssr117643	transcription start site region 117643	1859 bp downstream
Tssr117644	transcription start site region 117644	1970 bp downstream