rs33260907 SNP Detail

Summary

• ID
  rs33260907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:69147119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTGGGA AACTTTTCCA
  TTGCAGTGAG AGGCAGGGGT AGGGTATGGG GAAAGGCTCT GACCAAGAAA GTCCTCAAAC
  ATTACTTTTG AGTCTCCACA TCCACAGGAT TTACAAGTAT GTCAGGGCTC CCACTGGCTG
  CCAGCCAGGA AGCTTTCAGA TAGAGGGTCT TGGAACATGT GGGGGATGGG ATGGGGAGAG
  R
  GGAAAGTTTT TCTCAAACTG GTTCAAACCA CCGTTTCTTT CCATCGCACA AACTGGTCTT
  TGATTTGTGT ACACAGCTTT GGGGTGGGGG TGGAGACACA CCTGGAGTTC CATCCAGGGG
  CAGGGGCAAT CCTGGCACGT GGGCGGTTTC CGGCAGCCAA GCCCAGCACC CTCTGACTGT
  GTTCCTCTAC TTTGCGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39514457	mCV24540701	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A	A
ss145871974	ENSMUSSNP5172996	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33260907					SNP	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:69147119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9445	CpG island 9445	671 bp proximal
Rr530161	regulatory region 530161	1692 bp proximal
Tmem200c	transmembrane protein 200C	within coordinates