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rs33261031 SNP Detail
Summary
  • ID
    rs33261031
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:15499 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GTATTCTAAT TAAACTACTT CTTGAGTACA TAAATTTACA
TAGTACAACA GTACATTTAT GTATATCGTA CATTAAACTA TTTTCCCCAA GCATATAAGC
W
AGTACATTAA ATCAATGGTT CAGGTCATAA AATAATCATC AACATAAATC AATATATATA
CCATGAATAT TATCTTAAAC ACATTAAACT AATGTTATAA                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46791711 NES10981601 PERLEGEN MM_PANEL2 f SNP T T T T T T A T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33261031 SNP T T T T T T A T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46791711 NES10981601 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:15499 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Cytb mitochondrially encoded cytochrome b 211 bp downstream
mt-Nd5 mitochondrially encoded NADH dehydrogenase 5 1934 bp downstream
mt-Nd6 mitochondrially encoded NADH dehydrogenase 6 1429 bp upstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Rr999 mitochondrially encoded regulatory region 999 within coordinates
mt-Rr1000 mitochondrially encoded regulatory region 1000 699 bp distal
mt-Te mitochondrially encoded tRNA glutamic acid 1360 bp upstream
mt-Tp mitochondrially encoded tRNA proline 77 bp upstream
mt-Tt mitochondrially encoded tRNA threonine 144 bp downstream
Tssr5579 transcription start site region 5579 1446 bp upstream
Tssr5580 transcription start site region 5580 1075 bp upstream
Tssr160192 transcription start site region 160192 1864 bp downstream
Tssr160193 transcription start site region 160193 1840 bp downstream
Tssr160194 transcription start site region 160194 1655 bp downstream
Tssr160195 transcription start site region 160195 1632 bp downstream
Tssr160196 transcription start site region 160196 1370 bp downstream
Tssr160197 transcription start site region 160197 1345 bp downstream
Tssr160198 transcription start site region 160198 1197 bp downstream
Tssr160199 transcription start site region 160199 942 bp downstream
Tssr160200 transcription start site region 160200 922 bp downstream
Tssr160201 transcription start site region 160201 837 bp downstream
Tssr160202 transcription start site region 160202 821 bp downstream
Tssr160203 transcription start site region 160203 777 bp downstream
Tssr160204 transcription start site region 160204 743 bp downstream
Tssr160205 transcription start site region 160205 135 bp downstream
Tssr160206 transcription start site region 160206 69 bp downstream
Tssr160207 transcription start site region 160207 11 bp downstream
Tssr160208 transcription start site region 160208 21 bp upstream
Tssr160209 transcription start site region 160209 69 bp upstream
Tssr160210 transcription start site region 160210 117 bp upstream
Tssr160211 transcription start site region 160211 508 bp upstream
Tssr160212 transcription start site region 160212 571 bp upstream
Tssr160213 transcription start site region 160213 599 bp upstream
Tssr160214 transcription start site region 160214 630 bp upstream
Tssr160215 transcription start site region 160215 723 bp upstream
Tssr160320 transcription start site region 160320 1990 bp upstream
Tssr160321 transcription start site region 160321 1963 bp upstream
Tssr160322 transcription start site region 160322 1938 bp upstream
Tssr160323 transcription start site region 160323 1892 bp upstream
Tssr160324 transcription start site region 160324 1789 bp upstream
Tssr160325 transcription start site region 160325 1751 bp upstream
Tssr160326 transcription start site region 160326 1692 bp upstream
Tssr160327 transcription start site region 160327 1666 bp upstream
Tssr160328 transcription start site region 160328 1653 bp upstream
Tssr160329 transcription start site region 160329 1607 bp upstream
Tssr160330 transcription start site region 160330 1532 bp upstream
Tssr160331 transcription start site region 160331 1514 bp upstream
Tssr160332 transcription start site region 160332 1463 bp upstream
Tssr160333 transcription start site region 160333 1425 bp upstream
Tssr160334 transcription start site region 160334 1318 bp upstream
Tssr160335 transcription start site region 160335 1199 bp upstream
Tssr160336 transcription start site region 160336 956 bp upstream
Tssr160337 transcription start site region 160337 912 bp upstream
Tssr160338 transcription start site region 160338 807 bp upstream
Tssr160339 transcription start site region 160339 716 bp upstream
Tssr160340 transcription start site region 160340 675 bp upstream
Tssr160341 transcription start site region 160341 632 bp upstream
Tssr160342 transcription start site region 160342 612 bp upstream
Tssr160343 transcription start site region 160343 545 bp upstream
Tssr160344 transcription start site region 160344 467 bp upstream
Tssr160345 transcription start site region 160345 446 bp upstream
Tssr160346 transcription start site region 160346 399 bp upstream
Tssr160347 transcription start site region 160347 134 bp upstream
Tssr160348 transcription start site region 160348 120 bp upstream
Tssr160349 transcription start site region 160349 58 bp upstream
Tssr160350 transcription start site region 160350 131 bp downstream
Tssr160351 transcription start site region 160351 554 bp downstream
Tssr160352 transcription start site region 160352 681 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory