rs33261336 SNP Detail

Summary

• ID
  rs33261336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107903546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGTGTGT CTTGACGTGC
  AAAAGCTATA GACAAGGATC AGAGAGAAAA TGTAAACAAA TACTAGTGTG AGTGCTGTTA
  GAACAGGAAG CCGCCATTTT TTTTCTCAGA CCTATACCAG CTACACCGTC ATGTCGCAGA
  CTCTGAATTC ATCCTTGTCC CTCTTGGCAC TTCCTCTATC CCTGGAAATG CCTGTGGTAT
  Y
  GCCATTTTTA ATTGGTGTGT AATGTTCCTT CCTGGGCCTG TTTTCCCTGT TCTCTTCCTA
  TGAGAATCTA CCCCCCTTTC AGTTTCCCAC AATCACAGGG ATGACACAGG TGTTTGCATG
  TCCCCCTGCG TCCCTATGGT CAGTCTTCAT GGTGTCCTAG AAGTAACATC CCTAAGACAA
  CGGGACTGAG TACCCTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47276562	NES11394635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33261336					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276562	NES11394635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107903546 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	within coordinates
Rr472389	regulatory region 472389	1639 bp distal
Tssr117636	transcription start site region 117636	1359 bp downstream
Tssr117637	transcription start site region 117637	1385 bp downstream
Tssr117638	transcription start site region 117638	1450 bp downstream
Tssr117639	transcription start site region 117639	1465 bp downstream
Tssr117640	transcription start site region 117640	1486 bp downstream
Tssr117641	transcription start site region 117641	1506 bp downstream
Tssr117642	transcription start site region 117642	1543 bp downstream
Tssr117643	transcription start site region 117643	1661 bp downstream
Tssr117644	transcription start site region 117644	1772 bp downstream
Tssr117645	transcription start site region 117645	1803 bp downstream
Tssr117646	transcription start site region 117646	1843 bp downstream
Tssr117647	transcription start site region 117647	1859 bp downstream
Tssr117648	transcription start site region 117648	1919 bp downstream
Tssr117649	transcription start site region 117649	1945 bp downstream
Tssr117650	transcription start site region 117650	1983 bp downstream