rs33261343 SNP Detail

Summary

• ID
  rs33261343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107904254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGTGCT TTCCCAATAC
  TTTCCACTTC CTGGAAATGT GAGATAATGA ATAAAAATGT TCATTACTGA ATTATTCACT
  TTTCCTCCCT GATTCACGTC CTGGTAATTA CCGTGACCAG CCTAATAAAA ACTGCTACAA
  ACCGAGGGTC AACTGGCAGT TAGAAGTGTT CATTTTCATC TCAATGTATT CATCTCTGGC
  W
  CCTAATGGCC TCATTTTCTC CCATGCCCCT TAATAAATAC CACTGAATTA CAGGTTAAAT
  AGCTAAATTA AATTATTGCA ATTATAGCGT GCAGAGCCCT GAATCCGGGT TTACCTTTCC
  TGGTTCAATT AGAGACGAAG TTTCAACAGC CGCAGAATCA TGATTGCTGT CAATAATCTC
  GACGCTGAGA GTCTCGCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47276571	NES11394638	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33261343					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276571	NES11394638	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107904254 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	within coordinates
Tssr117636	transcription start site region 117636	651 bp downstream
Tssr117637	transcription start site region 117637	677 bp downstream
Tssr117638	transcription start site region 117638	742 bp downstream
Tssr117639	transcription start site region 117639	757 bp downstream
Tssr117640	transcription start site region 117640	778 bp downstream
Tssr117641	transcription start site region 117641	798 bp downstream
Tssr117642	transcription start site region 117642	835 bp downstream
Tssr117643	transcription start site region 117643	953 bp downstream
Tssr117644	transcription start site region 117644	1064 bp downstream
Tssr117645	transcription start site region 117645	1095 bp downstream
Tssr117646	transcription start site region 117646	1135 bp downstream
Tssr117647	transcription start site region 117647	1151 bp downstream
Tssr117648	transcription start site region 117648	1211 bp downstream
Tssr117649	transcription start site region 117649	1237 bp downstream
Tssr117650	transcription start site region 117650	1275 bp downstream