rs33261508 SNP Detail

Summary

• ID
  rs33261508
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCATAC TGGTAAAAGT
  CAAAGAACAA CTTGTAGGGC TCAGTTCACT CCTACAACCA GTGGGTCCTG GAGATAGAAT
  CCAGGTGATC AGACTTGGCC GTAAGTGTCT TTACCCACTG AGCTATCTCA CCAGGCCCCA
  AACTCTTGGA CTTAGAGGAT GCACAGCAGA TCCCAGAGTT GAGAGGAGAG AGGAAGAATA
  K
  CGGGATGAAA GAAAGGGAGA GAAATAGGAA ACACGATGGT GGCTCTGCCT TCTGTGGGGC
  AGAGCATCTC AACTTTGCTG GCCCACAGGC AGTCAAGTCC TCAGAAACTT CCTGGCAGAG
  CTGAATTTGT GGAGTATCAA AAAACACGAT TACAGAGGGA AAGAGAACTC TCTAAAATGT
  GTATGAAGAA ACTGAGAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46254690	mCV23160195	ABI	CRAMUS_MOUSE	f	SNP		T	G
ss61075541	NES16047887	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss148555683	ENSMUSSNP1713874	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33261508					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075541	NES16047887	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	605 bp distal
Prr36	proline rich 36	589 bp upstream
Rr658993	regulatory region 658993	246 bp distal
Tssr80256	transcription start site region 80256	1045 bp upstream
Tssr80257	transcription start site region 80257	1005 bp upstream
Tssr80258	transcription start site region 80258	922 bp upstream
Tssr80259	transcription start site region 80259	880 bp upstream
Tssr80260	transcription start site region 80260	796 bp upstream
Tssr80261	transcription start site region 80261	747 bp upstream
Tssr80262	transcription start site region 80262	545 bp upstream