rs33261800 SNP Detail

Summary

• ID
  rs33261800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrMT:16074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGTCTAGA CGCACCTACG GTGAAGAATC ATTAGTCCGC
  AAAACCCAAT CACCTAAGGC TAATTATTCA TGCTTGTTAG ACATAAATGC TACTCAATAC
  Y
  AAATTTTAAC TCTCCAAACC CCCCACCCCC TCCTCTTAAT GCCAAACCCC AAAAACACTA
  AGAACTTGAA AGACATATAA TATTAACTAT CAAACCCTAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46791720	NES10981605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33261800					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46791720	NES10981605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:16074 () rs orientation: forward

Symbol	Name	Function Class
mt-Cytb	mitochondrially encoded cytochrome b	786 bp downstream
mt-Rr998	mitochondrially encoded regulatory region 998	within coordinates
mt-Rr999	mitochondrially encoded regulatory region 999	74 bp distal
mt-Rr1000	mitochondrially encoded regulatory region 1000	1274 bp distal
mt-Te	mitochondrially encoded tRNA glutamic acid	1935 bp upstream
mt-Tp	mitochondrially encoded tRNA proline	652 bp upstream
mt-Tt	mitochondrially encoded tRNA threonine	719 bp downstream
Tssr5580	transcription start site region 5580	1650 bp upstream
Tssr160196	transcription start site region 160196	1945 bp downstream
Tssr160197	transcription start site region 160197	1920 bp downstream
Tssr160198	transcription start site region 160198	1772 bp downstream
Tssr160199	transcription start site region 160199	1517 bp downstream
Tssr160200	transcription start site region 160200	1497 bp downstream
Tssr160201	transcription start site region 160201	1412 bp downstream
Tssr160202	transcription start site region 160202	1396 bp downstream
Tssr160203	transcription start site region 160203	1352 bp downstream
Tssr160204	transcription start site region 160204	1318 bp downstream
Tssr160205	transcription start site region 160205	710 bp downstream
Tssr160206	transcription start site region 160206	644 bp downstream
Tssr160207	transcription start site region 160207	586 bp downstream
Tssr160208	transcription start site region 160208	542 bp downstream
Tssr160209	transcription start site region 160209	485 bp downstream
Tssr160210	transcription start site region 160210	449 bp downstream
Tssr160211	transcription start site region 160211	13 bp downstream
Tssr160212	transcription start site region 160212	within coordinates
Tssr160213	transcription start site region 160213	24 bp upstream
Tssr160214	transcription start site region 160214	55 bp upstream
Tssr160215	transcription start site region 160215	148 bp upstream
Tssr160333	transcription start site region 160333	2000 bp upstream
Tssr160334	transcription start site region 160334	1893 bp upstream
Tssr160335	transcription start site region 160335	1774 bp upstream
Tssr160336	transcription start site region 160336	1531 bp upstream
Tssr160337	transcription start site region 160337	1487 bp upstream
Tssr160338	transcription start site region 160338	1382 bp upstream
Tssr160339	transcription start site region 160339	1291 bp upstream
Tssr160340	transcription start site region 160340	1250 bp upstream
Tssr160341	transcription start site region 160341	1207 bp upstream
Tssr160342	transcription start site region 160342	1187 bp upstream
Tssr160343	transcription start site region 160343	1120 bp upstream
Tssr160344	transcription start site region 160344	1042 bp upstream
Tssr160345	transcription start site region 160345	1021 bp upstream
Tssr160346	transcription start site region 160346	974 bp upstream
Tssr160347	transcription start site region 160347	709 bp upstream
Tssr160348	transcription start site region 160348	695 bp upstream
Tssr160349	transcription start site region 160349	633 bp upstream
Tssr160350	transcription start site region 160350	407 bp upstream
Tssr160351	transcription start site region 160351	within coordinates
Tssr160352	transcription start site region 160352	106 bp downstream