rs33262372 SNP Detail

Summary

• ID
  rs33262372
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGACTTC TCCATTCCTC
  GGCTTCGAAG ACAAGGAATT CTACCACGGA CAGGGACTCT TGTCTGGTTT TTAAACAGTA
  CTGCTACTAA CACAAGGCAC AGGTGGATGG TAAGACCCAA GAGCCCACCA AAAACAGTAT
  GCAGAAATCC AGCAGTGGTG GGTAGGAGTC TGTAGCCGAG AGAAGAGCCC TTGGTCCTGG
  M
  AATGAAAGCC AGGTCTGGTC AGAGCTAAAG AGACAACAGA TTACCTGGAG GGTACCTGGA
  GGGGACCCAG AAGCCCTGTG CTCCCTACCA CTAAGTGCCC AAAACCAGAA CCTACTGCCC
  AACCCAGGGG ACATGAGCTG TACCCAAGAC CCTAAGCACA GATGTAGACA CTATGTAAGT
  CTTCACACTT GCTGAAGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47276583	NES11394465	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33262372					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276583	NES11394465	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905835 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	1246 bp downstream
Tssr117636	transcription start site region 117636	914 bp upstream
Tssr117637	transcription start site region 117637	885 bp upstream
Tssr117638	transcription start site region 117638	827 bp upstream
Tssr117639	transcription start site region 117639	808 bp upstream
Tssr117640	transcription start site region 117640	792 bp upstream
Tssr117641	transcription start site region 117641	775 bp upstream
Tssr117642	transcription start site region 117642	737 bp upstream
Tssr117643	transcription start site region 117643	618 bp upstream
Tssr117644	transcription start site region 117644	502 bp upstream
Tssr117645	transcription start site region 117645	453 bp upstream
Tssr117646	transcription start site region 117646	435 bp upstream
Tssr117647	transcription start site region 117647	423 bp upstream
Tssr117648	transcription start site region 117648	353 bp upstream
Tssr117649	transcription start site region 117649	327 bp upstream
Tssr117650	transcription start site region 117650	265 bp upstream