rs33263565 SNP Detail

Summary

• ID
  rs33263565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GGGACATGAG CTGTACCCAA
  S
  ACCCTAAGCA CAGATGTAGA CACTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47276586	NES11394466	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	G	G	C	G	G	G	G		C		C	G	C		G
ss138671256	ENSMUSSNP3618168	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G					C
ss324151915	CHEV_12_109177934	CHEVERUD	SCREENING_POP	f	SNP												C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33263565					SNP	G	G	G	C	G	G	C	G	G	G	G	C	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276586	NES11394466	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905983 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	1394 bp downstream
Tssr117636	transcription start site region 117636	1062 bp upstream
Tssr117637	transcription start site region 117637	1033 bp upstream
Tssr117638	transcription start site region 117638	975 bp upstream
Tssr117639	transcription start site region 117639	956 bp upstream
Tssr117640	transcription start site region 117640	940 bp upstream
Tssr117641	transcription start site region 117641	923 bp upstream
Tssr117642	transcription start site region 117642	885 bp upstream
Tssr117643	transcription start site region 117643	766 bp upstream
Tssr117644	transcription start site region 117644	650 bp upstream
Tssr117645	transcription start site region 117645	601 bp upstream
Tssr117646	transcription start site region 117646	583 bp upstream
Tssr117647	transcription start site region 117647	571 bp upstream
Tssr117648	transcription start site region 117648	501 bp upstream
Tssr117649	transcription start site region 117649	475 bp upstream
Tssr117650	transcription start site region 117650	413 bp upstream