rs33263718 SNP Detail

Summary

• ID
  rs33263718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GCCGCAGCAG CCGCGGCTCC
  R
  CTGATGGTCA CTTGCTCCTG GACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45257221	mCV25008039	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss146777248	ENSMUSSNP6704641	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320356651	CHEV_2_76807756	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33263718					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800043 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	567 bp distal
Rr559724	regulatory region 559724	481 bp proximal
Rr559725	regulatory region 559725	1203 bp proximal
Tssr18508	transcription start site region 18508	1228 bp downstream
Tssr24820	transcription start site region 24820	1229 bp upstream
Tssr24821	transcription start site region 24821	1197 bp upstream
Tssr24822	transcription start site region 24822	1167 bp upstream
Tssr24823	transcription start site region 24823	512 bp upstream
Tssr24824	transcription start site region 24824	473 bp upstream
Tssr24825	transcription start site region 24825	18 bp upstream
Tssr24826	transcription start site region 24826	9 bp downstream
Tssr24827	transcription start site region 24827	26 bp downstream
Tssr24828	transcription start site region 24828	114 bp downstream
Tssr24829	transcription start site region 24829	226 bp downstream
Ttn	titin	within coordinates