rs33267646 SNP Detail

Summary

• ID
  rs33267646
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71546530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACATCC CCCTATCCCA
  TCTGGTGCTC TCAGTCGCTC AGGAGGAAAG GCAGTGTACT CCTTTGGGAA TGGCAAAGCT
  CCAGGGCAGT CTGGTGGTGC GAGGCCTTGG TGTGGGAACA GGGCCAGTGG ACGTGGGCCT
  CCAACAGTGT CAGTGGCTGC CGTGGGCATA AATAAGGCTT GTTATAATAA TGTACATATT
  W
  TGCGTTCTCC CTTCAAGGAA TGTCCTTTTT GTTAACATTA ATGACTCCAT GTTAGTCTAA
  AACAGCATGA GTCTGGGAGG TGATGGTGTG GCCACTGTCT CAGCAAACTG GTAAACCCTG
  GGACCTTCAG GAGAGCTCTT AAGGCTGTGG AAAAGAACTC TAAAGACCTG AGTTCAAAAA
  TAAATAGTTT CTCAACTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39515532	mCV24393518	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss145892596	ENSMUSSNP5057992	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325442177	CHEV_17_71588875	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33267646					SNP	A	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71546530 () rs orientation: forward

Symbol	Name	Function Class
Lpin2	lipin 2	within coordinates
Tssr145747	transcription start site region 145747	1034 bp downstream