rs33268232 SNP Detail

Summary

• ID
  rs33268232
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23862566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG TCAACAAAAA CAAAATAGCC
  S
  TTTACCCTAA TCAGACTAGT AGCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39515738	mCV23796217	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss145329896	ENSMUSSNP5465249	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss325326679	CHEV_17_23780559	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33268232					SNP	G	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23862566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	956 bp proximal
Gm7773	predicted gene 7773	448 bp downstream
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	834 bp proximal
Tssr142937	transcription start site region 142937	1379 bp downstream
Tssr146619	transcription start site region 146619	1826 bp upstream
Tssr146620	transcription start site region 146620	1361 bp downstream
Tssr146621	transcription start site region 146621	1387 bp downstream
Tssr146622	transcription start site region 146622	1407 bp downstream
Tssr146623	transcription start site region 146623	1455 bp downstream
Tssr146624	transcription start site region 146624	1474 bp downstream
Tssr146625	transcription start site region 146625	1640 bp downstream
Tssr146626	transcription start site region 146626	1672 bp downstream